Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1262 141 1e-28 seq1221 138 2e-27 seq209 96.9 5e-15 >seq1262 Length=14089 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || ||| |||||||||| ||||| ||||| || || |||| | || | Sbjct 4291 TAAAATGCAGATTTTTGTAAAGACACTTACAGGAAAAACAATTACATTAGAATTAGATCC 4350 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 | ||||| ||| | | | ||| |||||||||||| ||||||||||| || || || Sbjct 4351 AGCAGATACTATTGAGACTGTTAAAGCGAAAATTCAAGACAAAGAAGGTATTCCTCCAGA 4410 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||| || ||||| ||||| ||||||||| |||| ||| | |||| | ||||| Sbjct 4411 CCAACAGAGACTTATATTTGCGGGAAAACAACTAGAAGATGGAAGAACTCTGAGTGATTA 4470 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || || || || ||| ||||||||| | |||||| | | ||||||||| Sbjct 4471 CAACATACAGAAGGAAAGTACTTTGCATCTTGTTTTAAGACTTAGAGGTGGTA 4523 >seq1221 Length=19326 Score = 138 bits (152), Expect = 2e-27 Identities = 293/434 (68%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 202791 TCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATC-ATGAATACCA 202849 |||| |||| ||||| ||||| | | | ||||||| | |||||||| || | |||| Sbjct 8144 TCATTGATCTTATTTTCCCAAAGAATTCTTTTTCTTTAAAAGCTCTATCCATTGA-ACCA 8202 Query 202850 CAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTA 202909 ||||| ||||||| ||| ||||||||| |||||| |||||| || ||| | | Sbjct 8203 CAAATACTCCACATAATTCCTGTATATCCATTAGGATCATTTCCATCCATTTGATACTCA 8262 Query 202910 TCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtt 202969 ||||| || | || ||||||| |||| | ||| ||||| | Sbjct 8263 TCATTAAATTCTATTGCTATTTTTAAAGCTTCTTTTGGT---TCAAACCACCTTAATAAT 8319 Query 202970 tttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTT 203029 ||||||||||||||||||| |||| |||||||||||||| | | | |||||| | | Sbjct 8320 GTTTTAGCCCAATACATTCTACAATAACCATGCATTTTACCCTCTCTTACCATTTGATGT 8379 Query 203030 TGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATAT 203089 || | |||||||||||| | || || ||| | ||||| |||||| | | | ||||| Sbjct 8380 TGAGCTGCATTCCATAATTCATCTTGTGTTTCTCCATTTCTAAGTTGTTCTTTAGTATAT 8439 Query 203090 ATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCA 203149 | ||| |||| || |||| || |||| ||||||| || ||| Sbjct 8440 GCTTTAGGTCTTTTATCTAAAGCATATTCAAGTAAAGTTTCCTTTGCCCATTTTAAAGCC 8499 Query 203150 CCATTTATATTATCGTAA---TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTA 203206 |||| ||||| || ||| |||||| | ||| ||| ||||| ||| || |||| | Sbjct 8500 CCATCAATATTGTCATAATTCTTTTCA-TGTAA-AAC-AAAATGTTCAGATGTTTCTCTC 8556 Query 203207 CGAATAATAGCTTC 203220 | |||| | |||| Sbjct 8557 CATATAAAAACTTC 8570 >seq209 Length=3804 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/177 (74%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 205617 AGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttat 205676 ||||||||| ||||||| | || |||| || | ||| || | ||| ||| | || | Sbjct 1188 AGGATTCCATGCTGTTACAACTAGTCTTCTTGAATAAGGCTTTTCTTTAATTGT--TTCT 1131 Query 205677 AATATGTGTT--AATTGATCAAATCCTTGATTTGTATAATTTGTAT-CCAT-ATCAATAT 205732 ||||||| || || ||||||||||||||||| ||||||| |||| ||| | || Sbjct 1130 AATATGTATTTAAACTGATCAAATCCTTGATTGGTATAATCAGTATGACATGTTTCGTAA 1071 Query 205733 ATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | | ||||||||||| |||||||| | ||||| | || ||| | |||| |||||| Sbjct 1070 ACT--GCACCAAAATGTCGCCATTGCCATCCATAGATTGCACCCATATCATCTTCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755443723840000