Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq580 138 1e-27 seq1043 134 1e-26 seq746 102 8e-17 >seq580 Length=1103 Score = 138 bits (152), Expect = 1e-27 Identities = 378/567 (67%), Gaps = 19/567 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||||||| |||||| ||||| ||||| || | || || ||||||||||| Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 | | || | | |||| ||||| | ||||||||| || ||||| || || |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATC-GCTCACCGTACGTTCTAtttttacttt 16412 |||||||||||| |||||||||| || || | | || ||| ||| | | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAAC--TCTCATTTGA--AT 928 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTATTGC 16470 |||||||| |||||||| || |||| |||| | | | | |||| || || | Sbjct 927 GAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT--TCAATACC 870 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA--GTAAACTA 16528 ||||||||| || | || ||| ||| ||| ||||| | || | || Sbjct 869 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 810 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 | | || ||||| ||| || || | || |||| |||||| | | |||| Sbjct 809 T--GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCT 752 Query 16589 GATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCT 16647 | || || | |||| ||||||| | |||| ||| |||| ||||| || ||||| Sbjct 751 AACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCTGA 693 Query 16648 AGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTT 16705 |||||||| || || || | |||||| ||| || || | || | ||||||| Sbjct 692 GGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTC 633 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 || | ||| | |||||| | ||||| | ||||| |||||||||| |||| Sbjct 632 AA--AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGAT 575 Query 16766 GCCTTTTTATACATTTTCCATATGTCT 16792 |||||||||||||| ||| || ||| Sbjct 574 GCCTTTTTATACATCACCCAAATCTCT 548 >seq1043 Length=1839 Score = 134 bits (148), Expect = 1e-26 Identities = 376/566 (66%), Gaps = 17/566 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||||||||||||| |||||| ||||| ||||| || | || || ||||||||||| Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 | | || | | |||| |||||| | ||||||||| || ||||| || || |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||||||||| |||||||||| || || | | | ||| ||| | | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATC-AAAACTCTCATTTGA--ATG 1663 Query 16414 tatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTATTGCA 16471 |||||||| |||||||| || |||| |||| | | | | |||| || || | Sbjct 1662 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT--TCAATACCG 1605 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA--GTAAACTAT 16529 ||||||||| || | || ||| ||| ||| ||||| | || | ||| Sbjct 1604 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 1545 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 | || ||||| ||| || || | || |||| |||||| | | |||| Sbjct 1544 --GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTA 1487 Query 16590 ATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | || || | |||| ||||||| | |||| ||| |||| ||||| || ||||| Sbjct 1486 ACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCTGAG 1428 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTA 16706 |||||||| || || | | |||||| ||| || || | || | ||||||| | Sbjct 1427 GCTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCA 1368 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 | | ||| | |||||| | || || | ||||| |||||||||| |||| | Sbjct 1367 A--AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATG 1310 Query 16767 CCTTTTTATACATTTTCCATATGTCT 16792 ||||||||||||| ||| || ||| Sbjct 1309 CCTTTTTATACATCCCCCAAATCTCT 1284 >seq746 Length=365 Score = 102 bits (112), Expect = 8e-17 Identities = 241/357 (68%), Gaps = 18/357 (5%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| | | || | || ||||||||||| ||||| |||| |||||||| || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTA-TCGCATCCCAATTCCAA 16059 |||||||||| || || |||| | | ||| |||| | || || || || | Sbjct 302 TCCATAAAATGGAATGG---GTTTGGAGTGTTGTAAATTTTAGACTCA-CCTAACTCATA 247 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 | ||||||||| || | |||||| || |||| ||||| | | ||||| || || Sbjct 246 AAGTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAAT 187 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 |||||| ||||| | || || | ||||| | |||||||| | ||| |||||| || Sbjct 186 TAATTTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTATTTCAACTGCTTCACGGAC 127 Query 16180 TATATCTCTTA-CTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAA 16237 |||||| | | ||| | |||| | | || | | | || | | |||| Sbjct 126 AATATCTTTAATGTACGGTGATTTCTC-----TCTGAAATACTCGTGAAGC---AAACAA 75 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||||||| |||||| ||||| ||||| || | || || |||||||||||| Sbjct 74 GCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462504484180000