Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1043 152 5e-32 seq580 147 2e-30 seq746 105 6e-18 >seq1043 Length=1839 Score = 152 bits (168), Expect = 5e-32 Identities = 383/567 (68%), Gaps = 19/567 (3%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 | || | | |||| |||||| ||||||||||||||||| || ||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCG 14381 ||| || ||||| |||||| || || | || | || |||| || |||| | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATG 1663 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| |||| ||||| |||||| || | || ||||||| | Sbjct 1662 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 1605 Query 14441 TTAAAT-AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 14495 |||||| |||| | ||| || | | | |||| || || | |||||| | || || Sbjct 1604 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 1548 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 1547 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 1490 Query 14556 CTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || || || | || | ||||||| | ||| ||||||| |||||| |||||||| Sbjct 1489 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 1431 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 |||||||| || || || | ||||||| || | | ||| || | | | | || Sbjct 1430 GAGGCTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 1371 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 | |||| ||| |||| || || | ||| ||||| ||||||| |||| Sbjct 1370 TCAAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGAT 1311 Query 14735 GCTTTTTTATACATTACCCATATTTCT 14761 || ||||||||||| |||| || ||| Sbjct 1310 GCCTTTTTATACATCCCCCAAATCTCT 1284 >seq580 Length=1103 Score = 147 bits (162), Expect = 2e-30 Identities = 382/567 (67%), Gaps = 19/567 (3%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 | || | | |||| ||||| | ||||||||||||||| || ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCG 14381 ||| || ||||| |||||| || || | || | || |||| || |||| | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAAC---TCTCATTTGAATG 927 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| |||| ||||| |||||| || | || ||||||| | Sbjct 926 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 869 Query 14441 TTAAAT-AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 14495 |||||| |||| | ||| || | | | |||| || || | |||||| | || || Sbjct 868 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 812 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 811 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 754 Query 14556 CTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || || || | || | ||||||| | ||| ||||||| |||||| |||||||| Sbjct 753 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 695 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 |||||||| || || | | ||||||| || | | ||| || | | | | || Sbjct 694 GAGGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 635 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 | |||| ||| |||| || ||| | ||| ||||| ||||||| |||| Sbjct 634 TCAAAATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGAT 575 Query 14735 GCTTTTTTATACATTACCCATATTTCT 14761 || ||||||||||| ||||| || ||| Sbjct 574 GCCTTTTTATACATCACCCAAATCTCT 548 >seq746 Length=365 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||||||| | | || |||| |||||||| ||||||||||||| || ||| || || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||||| ||||| |||| | | | | |||| ||||| || | ||| Sbjct 302 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGT 243 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 |||||||| ||||| || ||||| || | | |||| | | |||||| || |||| | Sbjct 242 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 183 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTAT 14130 |||||||| | | | |||||||| |||||||| Sbjct 182 TTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482337761884000