Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq580 129 7e-25 seq1043 125 9e-24 seq87 89.7 6e-13 seq746 82.4 1e-10 >seq580 Length=1103 Score = 129 bits (142), Expect = 7e-25 Identities = 378/570 (66%), Gaps = 12/570 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || ||||| |||| ||| || || || ||| | ||| |||||||| || || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 | || | | || | |||||| ||||||||||| | ||| || ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 || ||||| || |||||| ||||| | ||| || ||| | | ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAA 33819 ||| || |||||||||| ||||| || || | | |||| || | ||| || | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACCGTTAA 865 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA--AAGACTATACAT 33877 | | | | | ||| | ||| || | | ||| || ||||| ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 33878 TTCCGAATGAATGTTTTCAAT-GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 || ||||| |||||||| | ||| || || | || || | | | || | Sbjct 806 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 748 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | || | ||| || ||| |||||| |||||||| ||| || || ||||| ||||| Sbjct 747 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 688 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATTCCAA 34055 |||| || || | ||| ||| || ||| | || || | || || ||| | | || Sbjct 687 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAA 629 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTT 34114 ||||| |||||||| | ||| | |||||| || |||| |||||| || |||||| Sbjct 628 TCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTT 570 Query 34115 TTTATACATATTCCAGATGTCATGATATTG 34144 ||||||||| ||| || || || |||| Sbjct 569 TTTATACATCACCCAAATCTCTGGAAATTG 540 >seq1043 Length=1839 Score = 125 bits (138), Expect = 9e-24 Identities = 381/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || ||||| |||| ||| || || || ||| | ||| |||||||| || || Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 | || | | || | ||||| | ||||||||| | ||| || ||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 || ||||| || |||||| ||||| | ||| || ||| | | ||| || Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGAAT 1660 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAA 33819 ||| || |||||||||| ||||| || || | | |||| || | ||| || | |||| Sbjct 1659 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACCGTTAA 1601 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA--AGACTATACAT 33877 | | | | | ||| | ||| || | | ||| || ||||| ||| ||| | Sbjct 1600 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATG--T 1543 Query 33878 TTCCGAATGAATGTTTTCAATGGC-CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 || ||||| |||||||| | ||| || || | || || | | | || | Sbjct 1542 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 1484 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | || | ||| || ||| |||||| |||||||| ||| || || ||||| ||||| Sbjct 1483 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 1424 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAA 34055 |||| || || || ||| ||| || ||| | || || || | || | | || | || Sbjct 1423 CAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAAAA 1365 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT-GCCTCTGCCTT 34114 ||||| |||||||| | || | |||||| || ||||||| ||| || |||||| Sbjct 1364 TCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAA-TGACAGCAGATGCCTT 1306 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 ||||||||| ||| || || || |||| ||||| Sbjct 1305 TTTATACATCCCCCAAATCTCTGGAAATTGAATTGG 1270 >seq87 Length=528 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 63005 |||||||| || ||||| || || || | | || |||| | ||||| || || |||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63065 || | |||| || || |||||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 63066 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 || |||||||| ||| | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 >seq746 Length=365 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33311 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||| || || ||||||||||| |||| |||||| || || ||||| |||| || || || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 33371 GGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTC 33430 | | ||||||||||| || || ||| ||| |||||||| || | ||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 33431 TATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGT 33490 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 33491 AAGAAATTCTTGTTCAAT 33508 || |||||| | ||| || Sbjct 162 AAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807365464000