Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq580 114 1e-20 seq1043 109 5e-19 >seq580 Length=1103 Score = 114 bits (126), Expect = 1e-20 Identities = 350/528 (66%), Gaps = 20/528 (4%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||||||| ||| |||||||| || || || ||||||||||||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 | || | | |||| ||||| | ||||||||| |||||||| || || |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCT-TTCTCCATATACCTTGTTGCTAGATA 11807 ||| || || ||| |||||||| | | ||| | || | | | ||| || | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGA-A 925 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA-CGCATTCCATTGTTTCTATAGCGTTA 11866 ||||||| ||||||||||| || || || | | | | || ||| ||| ||||| Sbjct 924 TCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTA 866 Query 11867 AATAAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAA--TAAACTAT 11921 |||||| || | | || || ||| | | | || ||||| || || | ||| Sbjct 865 AATAAA---ATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 809 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA--ACATCGTGCCTC 11979 | || ||||| |||||| |||| ||| || | ||| || || || | || Sbjct 808 --GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTC--ACTTC 753 Query 11980 TGAACA-CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | |||| || | || | ||| | ||| |||||| | ||| ||||||||||| Sbjct 752 T-AACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTG 694 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | |||||| || ||||| | | ||| || || | || || || | |||| | | Sbjct 693 AGGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTT 634 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | |||||| |||||| | ||||| | ||||||||| ||||||| Sbjct 633 CAAAATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAA 586 >seq1043 Length=1839 Score = 109 bits (120), Expect = 5e-19 Identities = 349/528 (66%), Gaps = 20/528 (4%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||||||| ||| |||||||| || || || ||||||||||||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 | || | | |||| |||||| | ||||||||| |||||||| || || |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCT-TTCTCCATATACCTTGTTGCTAGATA 11807 ||| || || ||| |||||||| | | ||| | || | | | ||| || | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGA-A 1661 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA-CGCATTCCATTGTTTCTATAGCGTTA 11866 ||||||| ||||||||||| || || || | | | | || ||| ||| ||||| Sbjct 1660 TCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTA 1602 Query 11867 AATAAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAA--TAAACTAT 11921 |||||| || | | || || ||| | | | || ||||| || || | ||| Sbjct 1601 AATAAA---ATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 1545 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA--ACATCGTGCCTC 11979 | || ||||| |||||| |||| ||| || | ||| || || || | || Sbjct 1544 --GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTC--ACTTC 1489 Query 11980 TGAACA-CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | |||| || | || | ||| | ||| |||||| | ||| ||||||||||| Sbjct 1488 T-AACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTG 1430 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | |||||| || |||| | | ||| || || | || || || | |||| | | Sbjct 1429 AGGCTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTT 1370 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | |||||| |||||| | || || | ||||||||| ||||||| Sbjct 1369 CAAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468517186472000