Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq580 113 6e-20 seq87 89.7 7e-13 seq746 87.8 2e-12 >seq580 Length=1103 Score = 113 bits (124), Expect = 6e-20 Identities = 373/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || ||||| || | ||| || || || ||| | ||| || ||||| || || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 | || | | || | |||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || ||||| ||||| | ||| || ||| || | ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG-CATTGTCTCTATAGCATTAA 36395 ||| || |||||||||| ||||| || || | | |||| | ||| || ||| | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT-TCAATACCGTTAA 865 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA--AAGACTATACAT 36453 | | | | | ||| | ||| || | | || || ||||| ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || ||||| |||||||| | ||| || | || || | | | || || Sbjct 806 CTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACAT 747 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || | ||| || ||| |||||| |||||||| ||| || || || || |||||| Sbjct 746 GTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTGC 687 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTTATTCCAAT 36632 ||| || || | ||| ||| || ||| | || || | | || ||| | | ||| Sbjct 686 AAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAAT 628 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTTT 36691 |||| |||||||| | ||| | |||||| || |||| |||||| || ||||||| Sbjct 627 CATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTTT 569 Query 36692 TTATACATATTCCAGATGTCATGATATTGA 36721 |||||||| ||| || || || ||||| Sbjct 568 TTATACATCACCCAAATCTCTGGAAATTGA 539 >seq87 Length=528 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | |||| || || || ||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 || |||||||| ||| | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 >seq746 Length=365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 35887 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATT 35946 ||| || || |||||||||||||||| ||||| || || ||||| |||| |||||| || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 35947 GATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTC 36006 | || |||||||| || || ||| ||| |||||||| || | |||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 36007 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 36066 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 36067 AAGAAATTCTTGTTCAAT 36084 || |||||| | ||| || Sbjct 162 AAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162104692000