Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq580 100 4e-16 seq87 93.3 6e-14 >seq580 Length=1103 Score = 100 bits (110), Expect = 4e-16 Identities = 372/571 (65%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || ||||| |||| ||| || || || ||| ||||| || ||||| || || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 | || | | || | |||||| ||||||||||| | ||||| || || |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || ||||| || ||||| |||| | ||| || |||| | | ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAA 50197 ||| || |||||||||| ||||| || || | | |||| || | ||| || | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACCGTTAA 865 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA--AAGACTATACAT 50255 | | | | | ||| | ||| || | | ||| || ||||| ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 50256 TTCCGAATGAATGTTTTCAAT-GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 || ||||| |||||||| | ||| || || | || || | | | || | Sbjct 806 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 748 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 | || | ||| || ||| ||||| |||||||| ||| || || || || ||||| Sbjct 747 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 688 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTTAGTTTATTCCA 50432 |||| || || | ||| ||| || ||| || || | | | | |||| | | Sbjct 687 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT--TCAAA 630 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA-TGCCTCTGCCT 50491 |||||| |||||||| | ||| | |||||| || |||| |||||| || ||||| Sbjct 629 ATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCT 571 Query 50492 TTTTATACATATTCCAGATGTCATGATATTG 50522 |||||||||| ||| || || || |||| Sbjct 570 TTTTATACATCACCCAAATCTCTGGAAATTG 540 >seq87 Length=528 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 |||||||| || |||||||| || || | | || |||| | ||||| || ||||||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 || | ||| || ||||| ||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 || |||||||| ||| | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257128132000