Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1043 154 1e-32 seq580 150 2e-31 seq746 113 4e-20 >seq1043 Length=1839 Score = 154 bits (170), Expect = 1e-32 Identities = 386/569 (68%), Gaps = 23/569 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 | || | | |||| |||||| |||||||||||||||||||| || || |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCG 14049 ||| || ||||| |||||| || || | || | || |||| || |||| | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATG 1663 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCA 14108 | |||||||| |||||| |||| ||||| |||||| || | || ||||||| | Sbjct 1662 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 1605 Query 14109 TTAAAT-AAATATTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 14163 |||||| |||||| ||| || | | | |||| || || | |||||| | || || Sbjct 1604 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 1548 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 1547 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 1490 Query 14224 CCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 | || || | ||| ||||||| | ||| ||||||| |||||| |||||||| Sbjct 1489 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 1431 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 |||||||| || || || | ||||||| || | | ||| || | ||| | || Sbjct 1430 GAGGCTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 1371 Query 14343 TTCCAATCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | |||| || | ||| |||| || || | ||| ||||| ||||||| ||| Sbjct 1370 TCAAAATC--ATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAG 1313 Query 14401 CAGCTTTTTTATACATTACCCATATTTCT 14429 || ||||||||||| |||| || ||| Sbjct 1312 ATGCCTTTTTATACATCCCCCAAATCTCT 1284 >seq580 Length=1103 Score = 150 bits (166), Expect = 2e-31 Identities = 385/569 (68%), Gaps = 23/569 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 | || | | |||| ||||| | |||||||||||||||||| || || |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCG 14049 ||| || ||||| |||||| || || | || | || |||| || |||| | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAAC---TCTCATTTGAATG 927 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCA 14108 | |||||||| |||||| |||| ||||| |||||| || | || ||||||| | Sbjct 926 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 869 Query 14109 TTAAAT-AAATATTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 14163 |||||| |||||| ||| || | | | |||| || || | |||||| | || || Sbjct 868 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 812 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 811 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 754 Query 14224 CCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 | || || | ||| ||||||| | ||| ||||||| |||||| |||||||| Sbjct 753 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 695 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 |||||||| || || | | ||||||| || | | ||| || | ||| | || Sbjct 694 GAGGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 635 Query 14343 TTCCAATCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | |||| || | ||| |||| || ||| | ||| ||||| ||||||| ||| Sbjct 634 TCAAAATC--ATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAG 577 Query 14401 CAGCTTTTTTATACATTACCCATATTTCT 14429 || ||||||||||| ||||| || ||| Sbjct 576 ATGCCTTTTTATACATCACCCAAATCTCT 548 >seq746 Length=365 Score = 113 bits (124), Expect = 4e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| | | || |||| |||||||| ||||||||||||| || ||| || || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 13641 TCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||||||| ||||| ||| | || ||| | |||| ||||| || | | Sbjct 302 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAA--ATTTTAGACTCACCTAACTCATAAA 245 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||||||||||||||||| ||||| || | | |||| | | |||||| || |||| Sbjct 244 GTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTA 185 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTAT 13798 ||||||||| | | | |||||||| |||||||| Sbjct 184 ATTTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720204420000