Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1043 143 3e-29 seq580 138 1e-27 seq746 114 1e-20 >seq1043 Length=1839 Score = 143 bits (158), Expect = 3e-29 Identities = 381/567 (67%), Gaps = 19/567 (3%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 | || | | |||| |||||| ||||||||||||||||| || ||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTC-GTTCTCCAAACGATGCTTTTTTGTTTG 13837 ||| || ||||| |||||| || || | || | || |||| || |||| || Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATG 1663 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCGATTGCA 13896 | |||||||| |||||| |||| ||||| |||||| || | || ||| || | Sbjct 1662 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 1605 Query 13897 TTGAAT-AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 13951 || ||| |||| | ||| || | | | |||| || || | |||||| | || || Sbjct 1604 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 1548 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 1547 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 1490 Query 14012 CTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || || || | || ||||||| | |||| || |||| ||||||||||||||| Sbjct 1489 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 1431 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 |||||||| || || || | ||||||| || | | ||| || | ||| | || Sbjct 1430 GAGGCTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 1371 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 | |||| ||| |||| || || | ||| ||||| ||||||| ||| Sbjct 1370 TCAAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGAT 1311 Query 14191 GCTTTTTTATACATTACCCATATTTCT 14217 || ||||||||||| |||| || ||| Sbjct 1310 GCCTTTTTATACATCCCCCAAATCTCT 1284 >seq580 Length=1103 Score = 138 bits (152), Expect = 1e-27 Identities = 380/567 (67%), Gaps = 19/567 (3%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||| ||| | || ||||| || ||||||||| || |||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 | || | | |||| ||||| | ||||||||||||||| || ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTC-GTTCTCCAAACGATGCTTTTTTGTTTG 13837 ||| || ||||| |||||| || || | || | || |||| || |||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAAC---TCTCATTTGAATG 927 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCGATTGCA 13896 | |||||||| |||||| |||| ||||| |||||| || | || ||| || | Sbjct 926 A-ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCG 869 Query 13897 TTGAAT-AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGC 13951 || ||| |||| | ||| || | | | |||| || || | |||||| | || || Sbjct 868 TTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG- 812 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 || | ||| || | ||||| |||| || |||| |||||| | | ||| Sbjct 811 --TATGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTT 754 Query 14012 CTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || || || | || ||||||| | |||| || |||| ||||||||||||||| Sbjct 753 CTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCT 695 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 |||||||| || || | | ||||||| || | | ||| || | ||| | || Sbjct 694 GAGGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT 635 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 | |||| ||| |||| || ||| | ||| ||||| ||||||| ||| Sbjct 634 TCAAAATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGAT 575 Query 14191 GCTTTTTTATACATTACCCATATTTCT 14217 || ||||||||||| ||||| || ||| Sbjct 574 GCCTTTTTATACATCACCCAAATCTCT 548 >seq746 Length=365 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| | | || |||| ||||| || ||||||||||||| || ||| || || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 |||||||||| |||||| |||| | | | | |||| ||||| || | | | Sbjct 302 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGT 243 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 ||||||||||||||||| ||||| || | | |||| | | |||||| || |||| | Sbjct 242 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 183 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTAT 13586 |||||||| | | || |||||||| |||||||| Sbjct 182 TTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581022932000