Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq580 120 4e-22 seq87 93.3 6e-14 >seq580 Length=1103 Score = 120 bits (132), Expect = 4e-22 Identities = 377/572 (66%), Gaps = 14/572 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || ||||| |||| ||| ||||| || ||| | ||| || ||||| || || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 | || | | || | |||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || ||||| ||||| | ||| || ||| || | ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAA 42302 ||| || |||||||||| ||||| || || | | |||| || | ||| || | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACCGTTAA 865 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA--AAGACTATACAT 42360 | | | | | ||| | ||| || | | || || ||||| ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 42361 TTCTGAATGAATGTTTTCAAT-GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 || ||||| |||||||| | ||| || || | || || | | | || ||| Sbjct 806 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTC--TAA 750 Query 42420 CCTGT--ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | ||| | ||| || ||| ||||| |||||||| || || || || || ||| Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 690 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 |||||| || || | ||| ||| || ||| | || || ||| |||| | | | Sbjct 689 TGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAA 630 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA-TGCTTCTGCCT 42596 |||||| |||||||| | ||| | |||||| || |||| |||||| || ||||| Sbjct 629 ATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCT 571 Query 42597 TTTTATACATATTCCAGATATCATGATATTGA 42628 |||||||||| ||| || || || ||||| Sbjct 570 TTTTATACATCACCCAAATCTCTGGAAATTGA 539 >seq87 Length=528 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 71701 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTG 71760 |||||||| || |||||||| || || | | || |||| | ||||| |||||||||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || | |||| || || || ||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 || |||||||| || | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128293988000