Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1262 179 9e-40 seq1043 96.9 8e-15 seq580 87.8 4e-12 >seq1262 Length=14089 Score = 179 bits (198), Expect = 9e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | || ||||| || ||| ||| ||||| || || || ||| Sbjct 4521 CCACCTCTAAGTCTTAAAACAAGATGCAAAGTACTTTCCTTCTGTATGTTGTAATCACTC 4462 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||||||||||||||| ||||| || || |||||||| || ||||| Sbjct 4461 AGAGTTCTTCCATCTTCTAGTTGTTTTCCCGCAAATATAAGTCTCTGTTGGTCTGGAGGA 4402 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTAC 104511 || |||||||| || ||||| || ||||| ||| | || | ||||| ||| || |||| Sbjct 4401 ATACCTTCTTTGTCTTGAATTTTCGCTTTAACAGTCTCAATAGTATCTGCT-GGATCTAA 4343 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| |||||| || || || |||||||| |||||||| ||||||||||| Sbjct 4342 TTCTAATGTAATTGTTTTTCCTGTAAGTGTCTTTACAAAAATCTGCATTTT 4292 >seq1043 Length=1839 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| ||| ||||||||||||||||| || |||||||| || || ||||||| Sbjct 1694 TTGCATTTGCTTGTGTTGAAGGTATATTCTTTTCAGGATCTTTTGCTGCAATATTTTGGT 1753 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 |||| |||||||| || | || | | || || ||||| ||| | || ||||| | Sbjct 1754 TGAAAAAAAGAGGTATTCTTCCTGCTCTTACATTTTCTAATGAACTTATTTCAAGGGATG 1813 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 ||||||| || || || |||||| Sbjct 1814 AAGGTTTGCATACTGATTTTGCTTGT 1839 >seq580 Length=1103 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| ||| ||||||||||||||||| || |||||||| || || |||||| Sbjct 958 TTGCATTTGCTTGTGTTGAAGGTATATTCTTTTCAGGATCTTTTGCTGCAATATTTTGGC 1017 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 |||| || ||||| || | || | | || || ||||| ||| | || ||||| | Sbjct 1018 TGAAAAAGAGAGGTATTCTTCCTGCTCTTACATTTTCTAATGAACTTATTTCAAGGGATG 1077 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 ||||||| || || || |||||| Sbjct 1078 AAGGTTTGCATACTGATTTTGCTTGT 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151379222020400