Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1043 129 6e-25 seq580 129 6e-25 seq746 114 1e-20 >seq1043 Length=1839 Score = 129 bits (142), Expect = 6e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| ||||||||| |||||||||||||||||| || | ||||||||||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 | | || | | ||||| ||||| ||||||||||||| ||||| | |||||||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 21595 AATGCCCTCAACGGCAGCAAATGCAA 21620 || || ||||| ||||||||||| Sbjct 1719 TATACCTTCAACACAAGCAAATGCAA 1694 >seq580 Length=1103 Score = 129 bits (142), Expect = 6e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| ||||||||| |||||||||||||||||| || | ||||||||||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 | | || | | ||||||||||| | ||||||||||| ||||| | |||||||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 21595 AATGCCCTCAACGGCAGCAAATGCAA 21620 || || ||||| ||||||||||| Sbjct 983 TATACCTTCAACACAAGCAAATGCAA 958 >seq746 Length=365 Score = 114 bits (126), Expect = 1e-20 Identities = 239/351 (68%), Gaps = 14/351 (4%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||||| | || |||| || || ||||| || || |||| |||||| || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||||| ||||| ||| || || | |||||| ||| | || | | | Sbjct 302 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGT 243 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| || | |||||| || || | || |||| || | |||||| || || ||| Sbjct 242 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 183 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAATT 21421 |||||||| | ||| | | ||||| |||||||| || |||||| |||| | Sbjct 182 TTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTATTTCAACTGCTTCACGGACAA-T 124 Query 21422 ATATTTATTAT-CCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480 || |||| | | | ||| | || | |||| | || | |||||| || Sbjct 123 ATCTTTAATGTACGGTGAT-TTCT----CTCTGAAATACTCGT----GAAGCAAACAAGC 73 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||||| |||||||||||||||||| || | ||||||||||||||| Sbjct 72 AAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531892156612000