Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq580 113 6e-20 seq87 93.3 5e-14 >seq580 Length=1103 Score = 113 bits (124), Expect = 6e-20 Identities = 362/549 (66%), Gaps = 12/549 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || ||||| |||| ||| || || || ||| ||||| || ||||| || || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 | || | | || | |||||| ||||||||||| | ||| || ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 || ||||| || |||||| ||||| | ||| || ||| | | ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAA 33541 ||| || |||||||||| ||||| || || | | |||| || | ||| || | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACCGTTAA 865 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA--AAGACTATACAT 33599 | | | | | ||| | ||| || | | ||| || ||||| ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 33600 TTCCGAATGAATGTTTTCAAT-GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 || ||||| |||||||| | ||| || || | || || | | | || | Sbjct 806 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 748 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 | || | ||| || ||| ||||| ||||||| ||| || || || || ||||| Sbjct 747 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 688 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATTCCAA 33777 |||| || || | ||| ||| || ||| | || || | || || ||| | | || Sbjct 687 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAA 629 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTT 33836 ||||| |||||||| | ||| | |||||| || |||| |||||| || |||||| Sbjct 628 TCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTT 570 Query 33837 TTTATACAT 33845 ||||||||| Sbjct 569 TTTATACAT 561 >seq87 Length=528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | |||| || || |||||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 || |||||||| ||| | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937077108000