Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1043 113 6e-20 seq746 91.5 2e-13 seq87 89.7 7e-13 >seq1043 Length=1839 Score = 113 bits (124), Expect = 6e-20 Identities = 376/575 (65%), Gaps = 10/575 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || ||||| || | ||| || || || ||| | ||| || ||||| || || Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 | || | | || | ||||| | ||||||||| | ||||| ||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| || ||||| ||||| | ||| || ||| | | ||| || Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGAAT 1660 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC-ATTGTCTCTATAGCATTAA 32898 ||| || |||||||||| ||||| || || | | |||| | ||| || ||| | |||| Sbjct 1659 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT-TCAATACCGTTAA 1601 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA--AGACTATACAT 32956 | | | | | ||| | ||| || | | || || ||||| ||| ||| | Sbjct 1600 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATG--T 1543 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || ||||| |||||||| | ||| || | || || | | | || || Sbjct 1542 CTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACAT 1483 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 || | ||| || ||| |||||| |||||||| ||| || || || || |||||| Sbjct 1482 GTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTGC 1423 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAAT 33135 ||| || || || ||| ||| || ||| | || || || | || | | || | ||| Sbjct 1422 AAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAAAAT 1364 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT-GCCTCTGCCTTT 33194 |||| |||||||| | || | |||||| || ||||||| ||| || ||||||| Sbjct 1363 CATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAA-TGACAGCAGATGCCTTT 1305 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGG 33229 |||||||| ||| || || || |||||||||| Sbjct 1304 TTATACATCCCCCAAATCTCTGGAAATTGAATTGG 1270 >seq746 Length=365 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 32390 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATT 32449 ||| || || |||||||||||||||| ||||| || || ||||| |||| |||||| || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 32450 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTC 32509 | | || |||||||| || || ||| ||| |||||||| || | |||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 32510 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 32569 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 32570 AAGAAATTCTTGTTCAAT 32587 || |||||| | ||| || Sbjct 162 AAAAAATTCCTTTTCTAT 145 >seq87 Length=528 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 227 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 286 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 || | |||| || || || ||||| | ||||| ||||||| | | ||| | | Sbjct 287 CACAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTA 346 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 || |||||||| ||| | ||||||||||| || || || | | ||| || ||| |||| Sbjct 347 TCTTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633621703480000