Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1043 179 4e-40 seq580 172 6e-38 seq470 93.3 5e-14 >seq1043 Length=1839 Score = 179 bits (198), Expect = 4e-40 Identities = 398/584 (68%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||||| |||||||| || | ||| || | ||||| ||||| | | Sbjct 1838 CAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGA 1779 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 | || | | |||| ||| || | ||||||||||| ||||||| || ||||| ||| Sbjct 1778 GCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAAT 1719 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT-ACTGCT 93270 |||||||| || |||||||| | || | ||||| | | | || | || Sbjct 1718 ATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTC--ATTTGAATGA- 1662 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG-TAGTGTTTCGATAGCGT 93329 |||||||| | ||||||||| || |||||||||||| |||| || || ||| ||| ||| Sbjct 1661 -ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGT 1604 Query 93330 TAAATAGGTAATCTCGCTCGTCCGA--ATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 |||||| ||| || ||| ||| ||| || || || || ||| ||| || Sbjct 1603 TAAATA--AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 1546 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | ||| ||| ||||| || || | | ||| || | || || | | |||| Sbjct 1545 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAA 1486 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || || | ||| | || ||| | |||| | ||||| ||| || |||||||| || || Sbjct 1485 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 1426 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCC 93566 |||||| ||||| || | | || || ||| |||||||| || ||||| || || Sbjct 1425 TGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAA 1367 Query 93567 AATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||| ||| |||||| | || || | |||||| |||||||||| || ||| Sbjct 1366 AATC-ATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCC 1308 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||| ||||| |||| || ||| || |||||||||| | ||| Sbjct 1307 TTTTTATACATCCCCCAAATCTCTGGAAATTGAATTGGCAGTAT 1264 >seq580 Length=1103 Score = 172 bits (190), Expect = 6e-38 Identities = 390/573 (68%), Gaps = 15/573 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||||| |||||||| || | ||| || | ||||| ||||| | | Sbjct 1102 CAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGA 1043 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 | || | | |||| || || ||||||||||||| ||||||| || ||||| ||| Sbjct 1042 GCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAAT 983 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT-ACTGCT 93270 |||||||| || |||||||| | || | | ||||| | | | || | || Sbjct 982 ATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACT--CTCATTTGAATG-- 927 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG-TAGTGTTTCGATAGCGT 93329 |||||||| | ||||||||| || |||||||||||| |||| || || ||| ||| ||| Sbjct 926 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGT 868 Query 93330 TAAATAGGTAATCTCGCTCGTCCGA--ATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 |||||| ||| || ||| ||| ||| || || || || ||| ||| || Sbjct 867 TAAATA--AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 810 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | ||| ||| ||||| || || | | ||| || | || || | | |||| Sbjct 809 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAA 750 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || || | ||| | || ||| | |||| | ||||| ||| || |||||||| || || Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 690 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCC 93566 |||||| ||||| | | | || || ||| |||||||| || ||||| || || Sbjct 689 TGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAA 631 Query 93567 AATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||| ||| |||||| | || ||| | |||||| |||||||||| || ||| Sbjct 630 AATC-ATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGATGCC 572 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGA 93658 ||||| ||||| |||| || ||| || ||||| Sbjct 571 TTTTTATACATCACCCAAATCTCTGGAAATTGA 539 >seq470 Length=338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 198/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG-TAGTGTTTCGATAGCGTT 93330 |||||||| | ||||||||| || |||||||||||| |||| || || ||| ||| |||| Sbjct 22 ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTT 80 Query 93331 AAATAGGTAATCTCGCTCGTCCGA--ATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 ||||| ||| || ||| ||| ||| || || || || ||| ||| || Sbjct 81 AAATA--AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 138 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | ||| ||| ||||| || || | | ||| || | || || | | |||| Sbjct 139 GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAAC 198 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 || || | ||| | || ||| | |||| | ||||| ||| || |||||||| || ||| Sbjct 199 ATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCT 258 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAA 93557 ||||| ||||| || | | || || ||| |||||||| || ||||| Sbjct 259 GCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851751012000