Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq1043 104 3e-17 seq580 95.1 2e-14 seq1136 82.4 1e-10 seq241 82.4 1e-10 >seq2 Length=31068 Score = 123 bits (136), Expect = 3e-23 Identities = 314/468 (67%), Gaps = 20/468 (4%) Strand=Plus/Plus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 |||||||| |||||| | |||||| ||| | |||| |||||||||||||||| | Sbjct 29537 ATATCTAAAGGATTATAACATGGTATTGATGTAGACCATCCAGTACCAATACCTTCAGCT 29596 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGA---TTTGTTTA 183238 ||||| || || || | || || ||||| || ||||| || ||||| | | | || Sbjct 29597 CCATTGACTAATACCATAGGCAAAATAGGTACGTAATATTCTGGTTCAATACTCAGGTT- 29655 Query 183239 CCGTCGTCGTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCG 183298 |||||||| || |||||||||||||| ||||| | || ||||| || | Sbjct 29656 --GTCGTCGTTAAGGTAGTTTAATACTGGGTCATCATGAACATGAAAAA----TC-AACC 29708 Query 183299 TTTTTAGTCAATTTTG-TAAAT----ATATACCTGGTTTGACTCGCG-TCTTTACCACCC 183352 || ||||| ||| | || | ||||| || | ||| | | || | || ||| Sbjct 29709 TTGTTAGTGGATTAAGATACGTGCTAATATATCTTG-ATGAAGCATGATCATCTCCTCCC 29767 Query 183353 ATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTA 183412 | | ||||| |||||| ||| ||| ||||| ||||||||||| || || | Sbjct 29768 TTCAAACGTGAACCAAAAGTACCTGCTGGCATTAGTAAGTTAATATTATTAGAACCAACA 29827 Query 183413 AAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGAT 183472 |||| || ||||| || | ||||||| | ||||| | ||| || || ||||| | | Sbjct 29828 AAATCATACGCTAAATTAATTATTGTATTCGATAAAGACATTTCTCCATGATGATAAGCT 29887 Query 183473 GTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATG-TAAGATTCTT 183531 | | ||| ||||| || | || || | || || |||| ||||| ||| ||||| Sbjct 29888 GCGTGTTCAGAAACATAACCAATCAACTGAGATACTTTTATTTGAGATGTTAATTTTCTT 29947 Query 183532 TGTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 | | ||||| | | | | || |||| ||| ||||| | |||||| Sbjct 29948 T-TAAAACAGGAGAAGAGAACCTTTCTTTGTCCCGGTTTAAGACCATC 29994 Score = 105 bits (116), Expect = 8e-18 Identities = 259/390 (66%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 184010 TTAAGTAAACTCGGCCAGAAATAATGAATCATGTTAAGAATAAGTCCCTTGATATGACTT 184069 || |||||| || | |||| || || | ||||| ||| | ||||| |||||| | Sbjct 30425 TTCAGTAAAGATGGATAAAAATGATCAAAAAAGTTAATAATCAACCCCTTTATATGAGAT 30484 Query 184070 CCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTATCTGAGTTCGGAGAGTGAT 184129 ||||| |||| ||| ||||| ||||| | ||| ||||| | | | | | Sbjct 30485 CCATCAAAATCTTGATCTGTCATAATCATAACATGTCCATATCTTAATGATTAAACCGTA 30544 Query 184130 GTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTG-TT 184188 ||| || || || || | || ||||||||||| | || | | |||| ||| || Sbjct 30545 TCATAAACCTTATTATGTTGCAATCCTAAAATCTTTTTTA-ATGAGTTAACTTCTTCATT 30603 Query 184189 TTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAA 184248 ||| | | |||||| | || || | || || | ||| || | | || || Sbjct 30604 TTCACTTATTTGTTTATAAGATGCTTCTCTTACATTTAAAAGTTTTCCACGTAAAGGGAA 30663 Query 184249 AACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGA 184308 |||||| || | ||| | || ||||| |||||||| |||| || | |||||||||||| Sbjct 30664 AACACCATACTTATCCCTTCCTACAACCGAAAGACCTGCAACAGCTAATGTTTTTGCAGA 30723 Query 184309 ATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGC 184368 ||| ||||| || | ||| | ||||||| | | | | ||||| || | || || Sbjct 30724 ATCTCCTTCTGTTAAAATCAATGTACACTCTGAACTATTTTTAGTACCAGCATGGTTAGC 30783 Query 184369 ATCGTCGAGTTTTGGAATACCCGTTATTTT 184398 |||||| | ||| |||||||| |||| ||| Sbjct 30784 ATCGTCTAATTTAGGAATACCTGTTAATTT 30813 >seq1043 Length=1839 Score = 104 bits (114), Expect = 3e-17 Identities = 357/539 (66%), Gaps = 26/539 (5%) Strand=Plus/Minus Query 115363 TGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAA-ACCTGGAAGTAACCC 115421 |||| ||||||||| | || ||||||||| |||| ||| | | ||||| | || Sbjct 1823 TGCAAACCTTCATCCCTTGAAATAAGTTCATTAG-AAAATGTAAGAGCAGGAAGAATACC 1765 Query 115422 TCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACA 115481 ||| ||||| |||||||| || ||| |||| || || |||||||||||||||||||| Sbjct 1764 TCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACA 1705 Query 115482 CGCAAAGGC--TAATAAACGT-TCAGCAAATGGTCGTTTCTTATCAAACCACTTCATAGC 115538 ||||| || | || || ||| ||| || ||| || || ||| || | ||| Sbjct 1704 AGCAAATGCAATCATTCTAGTATCA--AAACTCTCATTT-GAATGAATCCATTTAAGAGC 1648 Query 115539 CCATTTCGCCTTTCTTTCGATACACGGA-ATTGTTTGAATTGCTTCGAATAATTGTTTCT 115597 ||| | |||||| | | ||| | ||| | || || ||| | | ||||| | | Sbjct 1647 CCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATAAAATATCCC 1589 Query 115598 TTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGTACCA 115657 | || | | || || ||| | ||||| | ||| ||| || ||| || || Sbjct 1588 TCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATGTCTCATTATGAACAT 1529 Query 115658 TTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGT--ATTTCATC 115715 ||||| | | |||| | ||||||||| | || ||| ||| ||||||| Sbjct 1528 TTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTC--TAACATGTGAATTTCATT 1471 Query 115716 TGCAAAA--TTATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCT 115773 | |||| || | | || ||||| | ||| |||||||| || | ||||| |||||| Sbjct 1470 AGTAAAACGTTCTAA--TAAATTTTGATTAACAATACCATCTGAGGCTGCAAAGAAAGCT 1413 Query 115774 AAAATATATTTTATAAAATGTTTTTCATTATCACTTAA---TTCATTCCAATCATCCATA 115830 || | | ||| || ||| || |||| || |||| |||| |||||| | Sbjct 1412 AACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCA---AAATCATTAGCA 1356 Query 115831 TCTTTGGAAAAGTCTATCTCTTCAGCGGTCCAATTTGACATTTG-GGCCTTTTTATACA 115888 ||||| | |||||| || |||||| | |||||| ||||| | ||||||||||||| Sbjct 1355 TCTTTAGTAAAGTCAATTTCTTCAACAGTCCAA-ATGACAGCAGATGCCTTTTTATACA 1298 >seq580 Length=1103 Score = 95.1 bits (104), Expect = 2e-14 Identities = 355/539 (66%), Gaps = 26/539 (5%) Strand=Plus/Minus Query 115363 TGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAA-ACCTGGAAGTAACCC 115421 |||| ||||||||| | || ||||||||| |||| ||| | | ||||| | || Sbjct 1087 TGCAAACCTTCATCCCTTGAAATAAGTTCATTAG-AAAATGTAAGAGCAGGAAGAATACC 1029 Query 115422 TCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACA 115481 ||||||||| | |||||| || ||| |||| || || |||||||||||||||||||| Sbjct 1028 TCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACA 969 Query 115482 CGCAAAGGC--TAATAAACGT-TCAGCAAATGGTCGTTTCTTATCAAACCACTTCATAGC 115538 ||||| || | || || ||| ||| || ||| || || ||| || | ||| Sbjct 968 AGCAAATGCAATCATTCTAGTGTCA--AAACTCTCATTT-GAATGAATCCATTTAAGAGC 912 Query 115539 CCATTTCGCCTTTCTTTCGATACACGGA-ATTGTTTGAATTGCTTCGAATAATTGTTTCT 115597 ||| | |||||| | | ||| | ||| | || || ||| | | ||||| | | Sbjct 911 CCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATAAAATATCCC 853 Query 115598 TTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGTACCA 115657 | || | | || || ||| | ||||| | ||| ||| || ||| || || Sbjct 852 TCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATGTCTCATTATGAACAT 793 Query 115658 TTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGT--ATTTCATC 115715 ||||| | | |||| | ||||||||| | || ||| ||| ||||||| Sbjct 792 TTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTC--TAACATGTGAATTTCATT 735 Query 115716 TGCAAAA--TTATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCT 115773 | |||| || | | || ||||| | ||| |||||||| || | ||||| |||||| Sbjct 734 AGTAAAACGTTCTAA--TAAATTTTGATTAACAATACCATCTGAGGCTGCAAAGAAAGCT 677 Query 115774 AAAATATATTTTATAAAATGTTTTTCATTATCACTTAA---TTCATTCCAATCATCCATA 115830 | | | ||| || ||| || |||| || |||| |||| |||||| | Sbjct 676 AGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCA---AAATCATTAGCA 620 Query 115831 TCTTTGGAAAAGTCTATCTCTTCAGCGGTCCAATTTGACATTTG-GGCCTTTTTATACA 115888 ||||| | ||| || || |||||| | |||||| ||||| | ||||||||||||| Sbjct 619 TCTTTAGTAAAATCAATTTCTTCAACAGTCCAA-ATGACAGCAGATGCCTTTTTATACA 562 >seq1136 Length=40139 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11442 TCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACG 11501 ||||||| ||||||| ||||| |||||||| ||||| || |||| |||| |||||||| Sbjct 12309 TCTTTTCATACCAATTGCATCTATTTCATCAATAAAAATTATACTCGGTGCTTTTTCACG 12250 Query 11502 TGCCAATTCAAAT 11514 ||||||| ||||| Sbjct 12249 TGCCAATGCAAAT 12237 >seq241 Length=210 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11442 TCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACG 11501 ||||||| ||||||| ||||| |||||||| ||||| || |||| |||| |||||||| Sbjct 171 TCTTTTCATACCAATTGCATCTATTTCATCAATAAAAATTATACTCGGTGCTTTTTCACG 112 Query 11502 TGCCAATTCAAAT 11514 ||||||| ||||| Sbjct 111 TGCCAATGCAAAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122479092000