Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1043 221 1e-52 seq580 203 4e-47 seq746 98.7 1e-15 seq87 84.2 2e-11 >seq1043 Length=1839 Score = 221 bits (244), Expect = 1e-52 Identities = 416/603 (69%), Gaps = 9/603 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||| ||| | || || || || || | ||||||||||||||| | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 | |||| | | ||||||||||| ||||| ||||| | |||||| ||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||||||||| || ||||| |||| | ||| || |||| ||||| ||| Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACT---CTCATTTGAATG 1663 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG-CATTGTCTCTATAGAAT 19198 ||||||||| || |||||||||||||| || || | | | || | ||| || ||| | Sbjct 1662 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT-TCAATACCGT 1604 Query 19199 TAAATAGATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 |||||| | | || | |||| ||| || | | | |||||||| | ||| Sbjct 1603 TAAATA-AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 1545 Query 19258 ATTTCTGAATGAATATTTTCTATAG-CCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 | || ||||| |||||| |||| ||| || || | ||||| | | ||||| Sbjct 1544 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 1486 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 || || | |||| || ||| | ||| | ||||||| |||||| || ||||| || Sbjct 1485 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 1426 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 |||||| || ||||| ||| |||||| ||| || ||||| | |||| || | | Sbjct 1425 TGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAA 1366 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 ||||||| |||||||| || || | ||||||||| ||||||| ||| ||| || Sbjct 1365 ATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTT 1306 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATT 19556 ||||||||| ||| || || || |||| || || | ||| | | ||||| ||| | Sbjct 1305 TTTATACATCCCCCAAATCTCTGGAAATTGAATTGGCAGTATTGTATACCTATTATTACT 1246 Query 19557 TTC 19559 ||| Sbjct 1245 TTC 1243 >seq580 Length=1103 Score = 203 bits (224), Expect = 4e-47 Identities = 392/570 (69%), Gaps = 9/570 (2%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||| ||| | || || || || || | ||||||||||||||| | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 | |||| | | ||||| ||||| | ||| ||||| | |||||| ||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||||||||| || ||||| |||| | ||| || |||| ||||| ||| Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACT---CTCATTTGAATG 927 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG-CATTGTCTCTATAGAAT 19198 ||||||||| || |||||||||||||| || || | | | || | ||| || ||| | Sbjct 926 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT-TCAATACCGT 868 Query 19199 TAAATAGATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 |||||| | | || | |||| ||| || | | | |||||||| | ||| Sbjct 867 TAAATA-AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT 809 Query 19258 ATTTCTGAATGAATATTTTCTATAG-CCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 | || ||||| |||||| |||| ||| || || | ||||| | | ||||| Sbjct 808 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 750 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 || || | |||| || ||| | ||| | ||||||| |||||| || ||||| || Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 690 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 |||||| || |||| ||| |||||| ||| || ||||| | |||| || | | Sbjct 689 TGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAA 630 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 ||||||| |||||||| ||||| | ||||||||| ||||||| ||| ||| || Sbjct 629 ATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTT 570 Query 19497 TTTATACATGTTCCATATATCACGATATTG 19526 ||||||||| ||| || || || |||| Sbjct 569 TTTATACATCACCCAAATCTCTGGAAATTG 540 >seq746 Length=365 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| | || || |||| ||||||||||||||||| || | ||||| || Sbjct 362 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 303 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT--CCTAATTCTAATA 18787 |||||||||| ||||| ||| || || | |||| || | ||||| || | | Sbjct 302 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAA--TTTTAGACTCACCTAACTCATAAA 245 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 ||| |||||| || | ||||| ||| || |||| | | |||||| || |||| Sbjct 244 GTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTA 185 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 |||| ||||||| || || | || |||||| | |||||| | ||||| || Sbjct 184 ATTTTACAGGTAAAGCCTCAGCAAAAAATTCCTTTTCTATTTCAACTGCTTC 133 >seq87 Length=528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 |||||| || ||||| ||||| || | | | || | ||||| || ||||||||||| Sbjct 229 AGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCACA 288 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTC 48004 | |||| || ||| ||||| || | ||||| |||||| | ||| | || Sbjct 289 CAAATTAGAACTTTTAATAGTTCCAAGATTTTTTTGATTAGATAATCTATTAGCAGTATC 348 Query 48005 CTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAAC 48064 || |||||||| |||| || ||||| ||||| || | | || || | | |||||| Sbjct 349 TTTATAAAGCATGTAAGGAGTACCAGTCTCTATTTGTGCTGTTATTATTGCTCTCCAAAG 408 Query 48065 AGTCCTAGCCTTTATAACAGCTCTAG-CTTTATTATCATGTTCGTATTTAGTATATAACT 48123 | | ||||| | | ||| ||||| |||| || || || || | | |||||| Sbjct 409 ATTTCTAGCTCTAACAACCTTTCTAGACTTTGTTTTC----TCATAGTGATGATATAATG 464 Query 48124 TCTCAAATTCATCCCCATACACATTATCTAACCC 48157 | ||||||| |||||||| | || ||| || Sbjct 465 ATTTAAATTCACTACCATACACTTCATGTAATCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099665732000