Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1043 167 3e-36 seq580 163 3e-35 >seq1043 Length=1839 Score = 167 bits (184), Expect = 3e-36 Identities = 392/584 (67%), Gaps = 11/584 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| ||||||||| ||| ||||||||||| || || | |||||||||||| || | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 | || | | |||||||||||| | |||||||||||| ||||||||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||||||||| |||||||| | | | ||| | ||| | | | ||| Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAAT---G 1663 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA-ATTGTTTCAATTGCTT 37413 ||||||||| | |||||| |||||| |||| | | | | || |||||| | | Sbjct 1662 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGT 1604 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA--GTAAACTATA 37471 | || | || | | || | ||| | ||| ||| || || | || | ||| Sbjct 1603 TAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT- 1545 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 | ||| |||| ||||||||||| || |||| |||||| || | |||| | Sbjct 1544 -GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAA 1486 Query 37532 TAATTGAACATCGTTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | |||| || ||| ||||| | || ||| |||| |||||| || ||||| | Sbjct 1485 CATGTGAATTTCATTAGTAAAACGTTCTA-ATAAATTTTGATTAACAATACCATCTGAGG 1427 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 ||||||||||||| | ||| ||| || ||| | ||||| | ||| ||| Sbjct 1426 CTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 1367 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 |||||||| |||||| | || |||| ||| ||||| ||||||| || |||| Sbjct 1366 AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCT 1307 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATT 37754 |||||||||| |||||| || | ||| ||||| | |||| Sbjct 1306 TTTTATACATCCCCCAAATCTCTGGAAATTGAATTGGCAGTATT 1263 >seq580 Length=1103 Score = 163 bits (180), Expect = 3e-35 Identities = 378/562 (67%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| ||||||||| ||| ||||||||||| || || | |||||||||||| || | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 | || | | |||||| ||||| | |||||||||||| ||||||||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||||||||||| |||||||| | | | || | ||| | | | ||| Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAAT---G 927 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA-ATTGTTTCAATTGCTT 37413 ||||||||| | |||||| |||||| |||| | | | | || |||||| | | Sbjct 926 AATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGT 868 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA--GTAAACTATA 37471 | || | || | | || | ||| | ||| ||| || || | || | ||| Sbjct 867 TAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT- 809 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 | ||| |||| ||||||||||| || |||| |||||| || | |||| | Sbjct 808 -GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAA 750 Query 37532 TAATTGAACATCGTTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | |||| || ||| ||||| | || ||| |||| |||||| || ||||| | Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTA-ATAAATTTTGATTAACAATACCATCTGAGG 691 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 ||||||||||||| || ||| ||| || ||| | ||||| | ||| ||| Sbjct 690 CTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 631 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 |||||||| |||||| | ||||||| ||| ||||| ||||||| || |||| Sbjct 630 AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCT 571 Query 37711 GTTTATACATCGTCCAAATATC 37732 |||||||||| |||||| || Sbjct 570 TTTTATACATCACCCAAATCTC 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592307174852000