Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq47 141 5e-29 seq468 122 4e-23 seq516 100 1e-16 >seq47 Length=784 Score = 141 bits (156), Expect = 5e-29 Identities = 298/434 (69%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 24696 TTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATG 24755 |||| | |||||||||||| ||| ||||| ||||||| || || || || |||||| Sbjct 722 TTCTCAAATAATACATTCCTGTTATCAATCCACTCTTCCACCCATAGAAGTGTGTTGATG 663 Query 24756 TTAGTTTTGCA-ATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 |||||| |||| ||| ||| || | | || | ||||| |||||| ||| ||| Sbjct 662 TTAGTTGTGCATATG-TTGGTGTCTTGAGGAAAAGATTCATTGATTGACTTTGATCTACA 604 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTT 24874 || |||||| ||||| ||||| ||||| || ||||||||| ||| || | |||| Sbjct 603 AATGCTTGTCTGTCTGCTGCTAAATCAATAATGGTTTTCATCTTTATTTCCCACACTGTC 544 Query 24875 TTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCT 24934 ||||| | ||| ||||| ||| || || ||| ||||| || || || | | Sbjct 543 TTGTACAGGTTTTTAATCTCCTCTGGTATTACTGGAATGTTTTGTACCGACCCCTCAT-A 485 Query 24935 CTCAATAGAT-TCAATCTCATATTCGGTGTCCA-AAGATTAATTTTTTCAAGATCTCTAA 24992 |||||| || | |||||| | |||| ||| ||||| |||| || |||| | Sbjct 484 CTCAATTAATAACTGTCTCATCTCATCATTCCATAAGTTTAATCTTTTTAA-ATCTTCCA 426 Query 24993 TCAAGTGTTTATTTATGATAAT-AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTT 25051 |||| ||||||| | | | ||| ||||| | || ||| ||| | | || || Sbjct 425 TCAAAAACTTATTTA-CACACTGAAACTCTCCTGCTAATGTTCTCCTTGTAAACAAATTA 367 Query 25052 GAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGC 25111 ||| | |||||||||||||||| | || || | || || || ||| |||||||||| Sbjct 366 CTAGTAATTGGTTCAAAACATTCACTGTTCCCGCATATCTGTGAGGTACTTGCTGTTGGC 307 Query 25112 ATTAATGCTATTAA 25125 || | ||| || || Sbjct 306 ATAAGTGCAATAAA 293 >seq468 Length=25681 Score = 122 bits (134), Expect = 4e-23 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 || ||| ||| |||||| ||||||||| | || |||||| | |||||||||||||| Sbjct 25679 AACATTAGGATCAAATAAACTCCAATCAGCGTCTTTTTCAACTCTTTCCATAAATAAATC 25620 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || ||||| | | |||||| ||||| || | ||| ||||| | || |||||| Sbjct 25619 AGGTATCCAAAGAGATGAAAATATTTCTCTAGCACGCATATCTTCATCACCAGTATTCTT 25560 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 ||| |||||| || |||||||||||| |||||||||||| || || |||||| Sbjct 25559 CCTTAAATCTAAAAATTCAAAAATATCTTCGTGCCATGGTTCCAAGTAAATAGCA 25505 >seq516 Length=1464 Score = 100 bits (110), Expect = 1e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | |||||||||||||| || ||||| | || |||| | ||||| || | | Sbjct 7 TCAACTCTTTCCATAAATAAATCAGGTATCCAAAGAGCTAAAAACATTTCTCTAGCACGC 66 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 || || || | || ||||||| ||| |||||| || |||||||||||| ||||| Sbjct 67 ATATCCTCATCACCAGTATTCTTTCTTAAATCTAAAAATTCAAAAATATCTTTATGCCAA 126 Query 26042 GGTTCTAAATAGATAGCA 26059 |||||||| || |||||| Sbjct 127 GGTTCTAAGTAAATAGCA 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253035990897500