Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12]
1,300 sequences; 4,570,278 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq47 141 5e-29
seq468 122 4e-23
seq516 100 1e-16
>seq47
Length=784
Score = 141 bits (156), Expect = 5e-29
Identities = 298/434 (69%), Gaps = 8/434 (2%)
Strand=Plus/Minus
Query 24696 TTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATG 24755
|||| | |||||||||||| ||| ||||| ||||||| || || || || ||||||
Sbjct 722 TTCTCAAATAATACATTCCTGTTATCAATCCACTCTTCCACCCATAGAAGTGTGTTGATG 663
Query 24756 TTAGTTTTGCA-ATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814
|||||| |||| ||| ||| || | | || | ||||| |||||| ||| |||
Sbjct 662 TTAGTTGTGCATATG-TTGGTGTCTTGAGGAAAAGATTCATTGATTGACTTTGATCTACA 604
Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTT 24874
|| |||||| ||||| ||||| ||||| || ||||||||| ||| || | ||||
Sbjct 603 AATGCTTGTCTGTCTGCTGCTAAATCAATAATGGTTTTCATCTTTATTTCCCACACTGTC 544
Query 24875 TTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCT 24934
||||| | ||| ||||| ||| || || ||| ||||| || || || | |
Sbjct 543 TTGTACAGGTTTTTAATCTCCTCTGGTATTACTGGAATGTTTTGTACCGACCCCTCAT-A 485
Query 24935 CTCAATAGAT-TCAATCTCATATTCGGTGTCCA-AAGATTAATTTTTTCAAGATCTCTAA 24992
|||||| || | |||||| | |||| ||| ||||| |||| || |||| |
Sbjct 484 CTCAATTAATAACTGTCTCATCTCATCATTCCATAAGTTTAATCTTTTTAA-ATCTTCCA 426
Query 24993 TCAAGTGTTTATTTATGATAAT-AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTT 25051
|||| ||||||| | | | ||| ||||| | || ||| ||| | | || ||
Sbjct 425 TCAAAAACTTATTTA-CACACTGAAACTCTCCTGCTAATGTTCTCCTTGTAAACAAATTA 367
Query 25052 GAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGC 25111
||| | |||||||||||||||| | || || | || || || ||| ||||||||||
Sbjct 366 CTAGTAATTGGTTCAAAACATTCACTGTTCCCGCATATCTGTGAGGTACTTGCTGTTGGC 307
Query 25112 ATTAATGCTATTAA 25125
|| | ||| || ||
Sbjct 306 ATAAGTGCAATAAA 293
>seq468
Length=25681
Score = 122 bits (134), Expect = 4e-23
Identities = 132/175 (75%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944
|| ||| ||| |||||| ||||||||| | || |||||| | ||||||||||||||
Sbjct 25679 AACATTAGGATCAAATAAACTCCAATCAGCGTCTTTTTCAACTCTTTCCATAAATAAATC 25620
Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004
|| ||||| | | |||||| ||||| || | ||| ||||| | || ||||||
Sbjct 25619 AGGTATCCAAAGAGATGAAAATATTTCTCTAGCACGCATATCTTCATCACCAGTATTCTT 25560
Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059
||| |||||| || |||||||||||| |||||||||||| || || ||||||
Sbjct 25559 CCTTAAATCTAAAAATTCAAAAATATCTTCGTGCCATGGTTCCAAGTAAATAGCA 25505
>seq516
Length=1464
Score = 100 bits (110), Expect = 1e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
|||||| | |||||||||||||| || ||||| | || |||| | ||||| || | |
Sbjct 7 TCAACTCTTTCCATAAATAAATCAGGTATCCAAAGAGCTAAAAACATTTCTCTAGCACGC 66
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
|| || || | || ||||||| ||| |||||| || |||||||||||| |||||
Sbjct 67 ATATCCTCATCACCAGTATTCTTTCTTAAATCTAAAAATTCAAAAATATCTTTATGCCAA 126
Query 26042 GGTTCTAAATAGATAGCA 26059
|||||||| || ||||||
Sbjct 127 GGTTCTAAGTAAATAGCA 144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253035990897500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |