Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1043 125 1e-23 seq580 122 1e-22 seq1262 107 3e-18 >seq1043 Length=1839 Score = 125 bits (138), Expect = 1e-23 Identities = 346/525 (66%), Gaps = 11/525 (2%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||||||||| || ||||||||||| || || || | ||| ||| ||| || | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 | || | |||||||||||||| | ||||||||| | || ||| | |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT-ATTT-ATTGCTC 18334 |||||| ||||| || || || || || | ||| | ||||||| | |||| | | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAAT---- 1664 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACT-CTCTATAGC 18393 | |||||||| | ||||| || | | ||| | || ||| | || ||| | Sbjct 1663 -GAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACC 1606 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||||| ||| ||| | || ||| || ||| ||| || || ||| ||| || Sbjct 1605 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 1546 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | ||| ||| | |||| |||| || ||||||||||| || || || Sbjct 1545 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGA-CTTCACTTCTA 1487 Query 18514 ATAT-TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | || ||||| || || ||| | ||||| ||||| | |||||| ||||| || | | Sbjct 1486 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 1427 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||| || || || || ||| |||||||||| || |||| || || | | | | Sbjct 1426 CTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 1367 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAA 18677 | |||| |||||| | | |||| |||||| ||||||| Sbjct 1366 AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAA 1322 >seq580 Length=1103 Score = 122 bits (134), Expect = 1e-22 Identities = 345/525 (66%), Gaps = 11/525 (2%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||||||||| || ||||||||||| || || || | ||| ||| ||| || | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 | || | |||||||| ||||| ||||||||||| | || ||| | |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT-ATTT-ATTGCTC 18334 |||||| ||||| || || || || || | ||| ||||||| | |||| | | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAAT---- 928 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACT-CTCTATAGC 18393 | |||||||| | ||||| || | | ||| | || ||| | || ||| | Sbjct 927 -GAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGG-ATAATGTTCAATACC 870 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||||| ||| ||| | || ||| || ||| ||| || || ||| ||| || Sbjct 869 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 810 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | ||| ||| | |||| |||| || ||||||||||| || || || Sbjct 809 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGA-CTTCACTTCTA 751 Query 18514 ATAT-TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | || ||||| || || ||| | ||||| ||||| | |||||| ||||| || | | Sbjct 750 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 691 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||| || || || | ||| |||||||||| || |||| || || | | | | Sbjct 690 CTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 631 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAA 18677 | |||| |||||| | | ||||| |||||| ||||||| Sbjct 630 AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCAAA 586 >seq1262 Length=14089 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || ||| | || ||| | || |||||||| |||||||||||| | || Sbjct 4291 TAAAATGCAGATTTTTGTAAAGACACTTACAGGAAAAACAATTACATTAGAATTAGATCC 4350 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 | |||| |||| | || ||| ||||| ||||| |||||||| || |||||||| Sbjct 4351 AGCAGATACTATTGAGACTGTTAAAGCGAAAATTCAAGACAAAGAAGGTATTCCTCCAGA 4410 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||| ||| | || | ||| || || || || |||||| |||||| | ||||| Sbjct 4411 CCAACAGAGACTTATATTTGCGGGAAAACAACTAGAAGATGGAAGAACTCTGAGTGATTA 4470 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||| || || || | ||| | || |||||| | ||||| ||| Sbjct 4471 CAACATACAGAAGGAAAGTACTTTGCATCTTGTTTTAAGACTTAGAGGTGGT 4522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731860107080000