Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq580 168 1e-36 seq1043 159 7e-34 seq1262 132 9e-26 >seq580 Length=1103 Score = 168 bits (186), Expect = 1e-36 Identities = 369/553 (67%), Gaps = 17/553 (3%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| |||||||||||||| ||||| || ||||| || |||| ||||||| ||| || | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 | || | | ||||||||||| ||||||||||||| |||||| | |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTT--ATCATC 49999 |||||| || ||||| |||||||| || ||||| | || |||| | |||| || | Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGA-- 926 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||||| || | ||||||||| || ||||| || |||||||| || ||| ||| | Sbjct 925 ----ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACC 870 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 |||||||| || | ||| || || ||| || Sbjct 869 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 810 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT-GCTTCTG 50178 | ||| ||| ||| ||| |||| ||| || |||||| || ||| ||||| Sbjct 809 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAA-TGACTTCACTTCTA 751 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 | |||| ||| | || ||||| | |||||| | | ||||||||||| || | Sbjct 750 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 691 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298 |||| ||||| |||| || |||||| ||| || |||| || |||||| |||| Sbjct 690 CTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 631 Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT- 50357 || | | ||| || | ||||| | |||||| | |||| |||||| | | ||| Sbjct 630 AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGA--CAGCAGATG 574 Query 50358 --TTTTTATACAT 50368 ||||||||||| Sbjct 573 CCTTTTTATACAT 561 >seq1043 Length=1839 Score = 159 bits (176), Expect = 7e-34 Identities = 367/553 (66%), Gaps = 17/553 (3%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| |||||||||||||| ||||| || ||||| || |||| ||||||| ||| || | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 | || | | ||||| ||||| | ||||||||||| |||||| | |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTT--ATCATC 49999 |||||| || ||||| |||||||| || ||||| | || |||| | |||| || | Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGA-- 1662 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||||| || | ||||||||| || ||||| || |||||||| || ||| ||| | Sbjct 1661 ----ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACC 1606 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 |||||||| || | ||| || || ||| || Sbjct 1605 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 1546 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT-GCTTCTG 50178 | ||| ||| ||| ||| |||| ||| || |||||| || ||| ||||| Sbjct 1545 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAA-TGACTTCACTTCTA 1487 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 | |||| ||| | || ||||| | |||||| | | ||||||||||| || | Sbjct 1486 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 1427 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298 |||| ||||| ||||| || |||||| ||| || |||| || |||||| |||| Sbjct 1426 CTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 1367 Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT- 50357 || | | ||| || | || || | |||||| | |||| |||||| | | ||| Sbjct 1366 AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGA--CAGCAGATG 1310 Query 50358 --TTTTTATACAT 50368 ||||||||||| Sbjct 1309 CCTTTTTATACAT 1297 >seq1262 Length=14089 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||||||||| | ||| || | ||| |||||| || || || || |||||| Sbjct 4523 TACCACCTCTAAGTCTTAAAACAAGATGCAAAGTACTTTCCTTCTGTATGTTGTAATCAC 4464 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| | |||| || | |||||| || ||||| || | ||||||||| || || | Sbjct 4463 TCAGAGTTCTTCCATCTTCTAGTTGTTTTCCCGCAAATATAAGTCTCTGTTGGTCTGGAG 4404 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||| ||||| ||||| ||| ||| | |||| ||||| | |||| Sbjct 4403 GAATACCTTCTTTGTCTTGAATTTTCGCTTTAACAGTCTCAATAGTATCTGCTGGATCTA 4344 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||||| ||||| ||||| || || | ||| || | ||| |||||||||||| Sbjct 4343 ATTCTAATGTAATTGTTTTTCCTGTAAGTGTCTTTACAAAAATCTGCATTTTA 4291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984463602255000