Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12]
1,300 sequences; 4,570,278 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq580 168 1e-36
seq1043 159 7e-34
seq1262 132 9e-26
>seq580
Length=1103
Score = 168 bits (186), Expect = 1e-36
Identities = 369/553 (67%), Gaps = 17/553 (3%)
Strand=Plus/Minus
Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882
||| |||||||||||||| ||||| || ||||| || |||| ||||||| ||| || |
Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044
Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942
| || | | ||||||||||| ||||||||||||| |||||| | ||||||||
Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984
Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTT--ATCATC 49999
|||||| || ||||| |||||||| || ||||| | || |||| | |||| || |
Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGA-- 926
Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059
||||| || | ||||||||| || ||||| || |||||||| || ||| ||| |
Sbjct 925 ----ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACC 870
Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119
|||||||| || | ||| || || ||| ||
Sbjct 869 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 810
Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT-GCTTCTG 50178
| ||| ||| ||| ||| |||| ||| || |||||| || ||| |||||
Sbjct 809 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAA-TGACTTCACTTCTA 751
Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238
| |||| ||| | || ||||| | |||||| | | ||||||||||| || |
Sbjct 750 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 691
Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298
|||| ||||| |||| || |||||| ||| || |||| || |||||| ||||
Sbjct 690 CTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 631
Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT- 50357
|| | | ||| || | ||||| | |||||| | |||| |||||| | | |||
Sbjct 630 AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGA--CAGCAGATG 574
Query 50358 --TTTTTATACAT 50368
|||||||||||
Sbjct 573 CCTTTTTATACAT 561
>seq1043
Length=1839
Score = 159 bits (176), Expect = 7e-34
Identities = 367/553 (66%), Gaps = 17/553 (3%)
Strand=Plus/Minus
Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882
||| |||||||||||||| ||||| || ||||| || |||| ||||||| ||| || |
Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780
Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942
| || | | ||||| ||||| | ||||||||||| |||||| | ||||||||
Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720
Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTT--ATCATC 49999
|||||| || ||||| |||||||| || ||||| | || |||| | |||| || |
Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGA-- 1662
Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059
||||| || | ||||||||| || ||||| || |||||||| || ||| ||| |
Sbjct 1661 ----ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACC 1606
Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119
|||||||| || | ||| || || ||| ||
Sbjct 1605 GTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTA 1546
Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT-GCTTCTG 50178
| ||| ||| ||| ||| |||| ||| || |||||| || ||| |||||
Sbjct 1545 TGTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAA-TGACTTCACTTCTA 1487
Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238
| |||| ||| | || ||||| | |||||| | | ||||||||||| || |
Sbjct 1486 ACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGG 1427
Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298
|||| ||||| ||||| || |||||| ||| || |||| || |||||| ||||
Sbjct 1426 CTGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAA 1367
Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT- 50357
|| | | ||| || | || || | |||||| | |||| |||||| | | |||
Sbjct 1366 AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGA--CAGCAGATG 1310
Query 50358 --TTTTTATACAT 50368
|||||||||||
Sbjct 1309 CCTTTTTATACAT 1297
>seq1262
Length=14089
Score = 132 bits (146), Expect = 9e-26
Identities = 169/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367
||||||||||||| | ||| || | ||| |||||| || || || || ||||||
Sbjct 4523 TACCACCTCTAAGTCTTAAAACAAGATGCAAAGTACTTTCCTTCTGTATGTTGTAATCAC 4464
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| |||| | |||| || | |||||| || ||||| || | ||||||||| || || |
Sbjct 4463 TCAGAGTTCTTCCATCTTCTAGTTGTTTTCCCGCAAATATAAGTCTCTGTTGGTCTGGAG 4404
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || |||||||| ||||| ||||| ||| ||| | |||| ||||| | ||||
Sbjct 4403 GAATACCTTCTTTGTCTTGAATTTTCGCTTTAACAGTCTCAATAGTATCTGCTGGATCTA 4344
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540
||||| ||||| ||||| || || | ||| || | ||| ||||||||||||
Sbjct 4343 ATTCTAATGTAATTGTTTTTCCTGTAAGTGTCTTTACAAAAATCTGCATTTTA 4291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984463602255000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |