Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq580 158 2e-33 seq1043 149 1e-30 seq1262 132 9e-26 >seq580 Length=1103 Score = 158 bits (174), Expect = 2e-33 Identities = 185/247 (75%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||||| ||||| |||||||| ||||| || |||| ||||||| ||| || | Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 | || | | ||||||||||| ||||||||||||| |||||| | |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTTATCATCTA 39303 |||||| || ||||| |||||||| || ||||| | || |||| | |||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTT-GAAT--- 928 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||| || | |||||||| || ||||| || |||||||| || ||| ||| | | Sbjct 927 GAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACCGT 868 Query 39364 TAAATAA 39370 ||||||| Sbjct 867 TAAATAA 861 >seq1043 Length=1839 Score = 149 bits (164), Expect = 1e-30 Identities = 183/247 (74%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||||| ||||| |||||||| ||||| || |||| ||||||| ||| || | Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 | || | | ||||| ||||| | ||||||||||| |||||| | |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTTATCATCTA 39303 |||||| || ||||| |||||||| || ||||| | || |||| | |||| || Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTT-GAAT--- 1664 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||| || | |||||||| || ||||| || |||||||| || ||| ||| | | Sbjct 1663 GAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACCGT 1604 Query 39364 TAAATAA 39370 ||||||| Sbjct 1603 TAAATAA 1597 >seq1262 Length=14089 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||||||||||| ||| || | ||| |||||| || || || || ||||| Sbjct 4523 TACCACCTCTAAGTCTTAAAACAAGATGCAAAGTACTTTCCTTCTGTATGTTGTAATCAC 4464 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | || || | | || || | |||||| || ||||| || | |||||||||||| || | Sbjct 4463 TCAGAGTTCTTCCATCTTCTAGTTGTTTTCCCGCAAATATAAGTCTCTGTTGGTCTGGAG 4404 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || |||||||| ||||| ||||| ||| ||| | |||||||||| | |||| Sbjct 4403 GAATACCTTCTTTGTCTTGAATTTTCGCTTTAACAGTCTCAATAGTATCTGCTGGATCTA 4344 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| ||||| ||||| || || | ||| || | || |||||||||||| Sbjct 4343 ATTCTAATGTAATTGTTTTTCCTGTAAGTGTCTTTACAAAAATCTGCATTTTA 4291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905121291540000