Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq580 120 9e-22 seq1043 118 3e-21 >seq580 Length=1103 Score = 120 bits (132), Expect = 9e-22 Identities = 290/431 (67%), Gaps = 11/431 (3%) Strand=Plus/Plus Query 133230 TAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGG 133289 |||| || ||||| || |||||||||||| | |||||||| | ||| |||| Sbjct 676 TAGCTTTCTTTGCAGCCTCAGATGGTATTGTTAATCAAAATTTATTAGAACGTTTTACTA 735 Query 133290 GAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATA 133349 ||| |||| || |||| | |||||| | |||| | | || |||||| Sbjct 736 ATGAAATTCACATGTTAGAAGTGAAGTCATTTTATAGTTTACAATGTTCTATTGAAAATG 795 Query 133350 TCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGAT-ACCGTCCAGAAG 133408 | ||| | ||||| |||| | || || ||| ||||| ||| | ||| ||| | Sbjct 796 TTCATAATGAGACATACTCTAAGTTGATAGAAACTCTTATCAAGGATGATCGTG-AGAGG 854 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 | | |||| |||| ||| | | ||||| |||||| || || |||| |||||| Sbjct 855 GATATTTTATTTAACGGTATTGAACATTATCCTTCTATTAAGAAAAAGGCTGATTGGGCT 914 Query 133469 ATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528 |||||||||| || || || |||||||| ||| | | |||| |||||| Sbjct 915 CTTAAATGGATTCATTCAAA---TGAGAGTTTTGACACTAGAATGATTGCATTTGCTTGT 971 Query 133529 GTAGAGGGCAtttt--tttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGT 133585 || || || || || |||||| | | || |||| | || |||||||| |||||| | Sbjct 972 GTTGAAGGTATATTCTTTTCAG--GATCTTT-TGCTGCAATATTTTGGCTGAAAAAGAGA 1028 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCAC 133645 |||||||| |||| || |||||||| ||||||||||||||||| || | | || Sbjct 1029 GGTATTCTTCCTGCTCTTACATTTTCTAATGAACTTATTTCAAGGGATGAAGGTTTGCAT 1088 Query 133646 ACCGAATTTGC 133656 || || ||||| Sbjct 1089 ACTGATTTTGC 1099 >seq1043 Length=1839 Score = 118 bits (130), Expect = 3e-21 Identities = 290/432 (67%), Gaps = 11/432 (3%) Strand=Plus/Plus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || ||||| || |||||||||||| | |||||||| | ||| |||| Sbjct 1411 TTAGCTTTCTTTGCAGCCTCAGATGGTATTGTTAATCAAAATTTATTAGAACGTTTTACT 1470 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 ||| |||| || |||| | |||||| | |||| | | || |||||| Sbjct 1471 AATGAAATTCACATGTTAGAAGTGAAGTCATTTTATAGTTTACAATGTTCTATTGAAAAT 1530 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGAT-ACCGTCCAGAA 133407 | ||| | ||||| |||| | || || ||| ||||| ||| | ||| ||| Sbjct 1531 GTTCATAATGAGACATACTCTAAGTTGATAGAAACTCTTATCAAGGATGATCGTG-AGAG 1589 Query 133408 GCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | | | |||| |||| ||| | | ||||| |||||| || || |||| ||||| Sbjct 1590 GGATATTTTATTTAACGGTATTGAACATTATCCTTCTATTAAGAAAAAGGCTGATTGGGC 1649 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 | |||||||||| || || || |||||||| |||| | | |||| |||||| Sbjct 1650 TCTTAAATGGATTCATTCAAA---TGAGAGTTTTGATACTAGAATGATTGCATTTGCTTG 1706 Query 133528 AGTAGAGGGCAtttt--tttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCG 133584 || || || || || |||||| | | || |||| | || |||||| | ||||| | Sbjct 1707 TGTTGAAGGTATATTCTTTTCAG--GATCTTT-TGCTGCAATATTTTGGTTGAAAAAAAG 1763 Query 133585 TGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 |||||||| |||| || |||||||| ||||||||||||||||| || | | || Sbjct 1764 AGGTATTCTTCCTGCTCTTACATTTTCTAATGAACTTATTTCAAGGGATGAAGGTTTGCA 1823 Query 133645 CACCGAATTTGC 133656 || || ||||| Sbjct 1824 TACTGATTTTGC 1835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471793085038100