Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq675 105 8e-18 seq1 86.0 8e-12 >seq675 Length=13674 Score = 105 bits (116), Expect = 8e-18 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 192949 TAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 193006 ||| ||||||||| ||||| | || || ||| | | | || || | |||| | || | | Sbjct 10509 TAATTTATCCACAGAAACCTTTAGTAACTACACGTTCTATGGAATACTTAAAATATAA-A 10567 Query 193007 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCA 193066 |||| || | ||| ||| |||||||||||| ||||| ||||||||||||||||| Sbjct 10568 GAATTA-CCTAGTGGACAGAATTGTATTGTTGCTATTGCTTGTTATACTGGTTATAATCA 10626 Query 193067 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAAC 193126 ||||| |||||| | |||| ||| ||||||| ||||| |||||| | | | | Sbjct 10627 GGAAGATTCAATTATTATGAATAGGGCTGCTATTGATAGAGGGTTATTTAGATCATTTAT 10686 Query 193127 TTATAATACATATACAGTTGAAGAAACAA 193155 ||||| |||||| | | | |||||| || Sbjct 10687 TTATAGAACATATTCTGATCAAGAAAAAA 10715 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 193401 GATGGTTGTAGAATAGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGAT 193460 ||||||| |||| | |||| ||| || | ||| | |||||||||| || ||| Sbjct 10991 GATGGTTATAGATTCTTTAAGGTTAAAATAAGAAGTTTAAGAATACCTGAAAGGGGTGAT 11050 Query 193461 AAATTTTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGAT 193520 |||||| ||| || || || |||||||| || || |||| ||||| ||| Sbjct 11051 AAATTTGCTTCTAGACATGCTCAGAAAGGAACAATAGGAATTATTTTAGATCAAGAGGAT 11110 Query 193521 ATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCA 193580 ||||||||||| | | ||||| | || || || ||||||||||| || ||| ||| Sbjct 11111 ATGCCATTTACTGGTGAGGGTATCATTCCTGACATAATTATTAATCCTCATGCTATCCCA 11170 Query 193581 TCCAGAATGACCATT 193595 || | ||||| ||| Sbjct 11171 TCTCGTATGACTATT 11185 >seq1 Length=15122 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 51834 CTTGAAGTTGGAGACTTGGTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAAT 51893 |||||| ||||| | ||| ||||||| || |||| ||| | ||| || || ||| Sbjct 11554 CTTGAAATTGGATCTATTGTTGAAAGACATTTACAAGATGATGACGTTGTTCTCTTCAAT 11495 Query 51894 AGGCAACCAACACTTCATAAAGCTTCTATG------CAAAGTTTTAAAGTTAAAATTCAA 51947 || ||||| ||||||| ||| |||||| || || |||| || |||| | Sbjct 11494 AGACAACCTTCACTTCACAAAATGTCTATGATGGCTCACAGAATTAAGGT---AATTAA- 11439 Query 51948 CCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGAT 52007 |||||||| | |||| | ||| | | |||| | |||||||| ||||||||| Sbjct 11438 -CAGTAAAA-CTTTTACTGTAAATCTTAGTGCAACTACTCCTTATAATGCAGATTTTGAT 11381 Query 52008 GGGGATGAAATGAATTTACATGTTCCTCA 52036 || |||||||||||| ||||||| || || Sbjct 11380 GGTGATGAAATGAATGTACATGTACCACA 11352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635167278364000