Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq675 96.9 4e-15 seq1 95.1 2e-14 seq2 82.4 1e-10 >seq675 Length=13674 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 192502 TAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 192559 ||| ||||||||| ||||| | || || ||| | | | || || | |||| | || | | Sbjct 10509 TAATTTATCCACAGAAACCTTTAGTAACTACACGTTCTATGGAATACTTAAAATATAA-A 10567 Query 192560 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCA 192619 |||| || | ||| ||| |||||||||||| ||||| |||||||| ||||| || Sbjct 10568 GAATTA-CCTAGTGGACAGAATTGTATTGTTGCTATTGCTTGTTATACTGGTTATAATCA 10626 Query 192620 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAAC 192679 ||||| |||||| | |||| ||| ||||||| ||||| |||||| | | | | Sbjct 10627 GGAAGATTCAATTATTATGAATAGGGCTGCTATTGATAGAGGGTTATTTAGATCATTTAT 10686 Query 192680 TTATAATACATATACAGTTGAAGAAACAA 192708 ||||| |||||| | | | |||||| || Sbjct 10687 TTATAGAACATATTCTGATCAAGAAAAAA 10715 >seq1 Length=15122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/210 (71%), Gaps = 14/210 (7%) Strand=Plus/Minus Query 50284 CTTGAAGTTGGAGACTTGGTTAAAAGACAATTGATAGATGGTGATGATGTACTATTAAAT 50343 |||||| ||||| | ||| ||||||| || ||||| ||| | ||| || || ||| Sbjct 11554 CTTGAAATTGGATCTATTGTTGAAAGACATTTACAAGATGATGACGTTGTTCTCTTCAAT 11495 Query 50344 AGGCAACCAACACTTCATAAAGCTTCTATG------CAAAGTTTTAAAGTTAAAATTCAA 50397 || ||||| ||||||| ||| |||||| || || |||| || |||| | Sbjct 11494 AGACAACCTTCACTTCACAAAATGTCTATGATGGCTCACAGAATTAAGGT---AATTAA- 11439 Query 50398 CCAGTAAAAACATTTAAAATGAAT-TTAGCTATGACTAAAGCATATAATGCTGATTTTGA 50456 |||||||| | |||| | ||| |||| | |||| | |||||||| |||||||| Sbjct 11438 -CAGTAAAA-CTTTTACTGTAAATCTTAG-TGCAACTACTCCTTATAATGCAGATTTTGA 11382 Query 50457 TGGGGATGAAATGAATTTACATGTTCCTCA 50486 ||| |||||||||||| ||||||| || || Sbjct 11381 TGGTGATGAAATGAATGTACATGTACCACA 11352 >seq2 Length=31068 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 || ||||| |||| || | ||| |||||| | ||||| ||| |||| | ||||| ||| Sbjct 29928 ATAAAAGTATCTCAGTTGATTGGTTATGTTTCTGAACACGCAGCTTATCATCATGGAGAA 29869 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 ||||| | || |||||||| || || | |||||||||||| | |||||||| Sbjct 29868 ATGTCTTTATCGAATACAATAATTAATTTAGCGTATGATTTTGTTGGTTCTAATAATATT 29809 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 ||||| || | ||| |||||| | | || | ||||| | ||| ||| Sbjct 29808 AACTTACTAATGCCAGCAGGTACTTTTGGTTCACGTTTGAAGGGAGGAGATGATCATGCT 29749 Query 165340 GCATCAAGATATATT 165354 |||||||||||||| Sbjct 29748 TCATCAAGATATATT 29734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628520986368000