Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq291 181 8e-40 seq2 145 6e-29 seq630 113 3e-19 seq1 105 5e-17 >seq291 Length=15756 Score = 181 bits (200), Expect = 8e-40 Identities = 222/302 (74%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||||||||| ||||| || ||| ||||| || | | ||||||| || | || Sbjct 8538 TATCAAAATCTTCTCCTCCTAAAAAAGTGTTTCCATTTGTTGATTTTACTTGAAAGATTC 8479 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 |||||| | ||||| || || |||| ||||| || || | |||| ||| || Sbjct 8478 CATCTTTTATTTCCAAAATAGAAATATCAAATGTTCCTCCTCCTAAATCATAAACTGCTA 8419 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 || |||| ||| || |||||||| ||||| || ||||| || || ||||||| Sbjct 8418 TATAACCTTCT----CTT--TTCTTATCAAGTCCATAAGCTAAAGCGGCTGCCGTTGGTT 8365 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||||||||||||||||||||| ||| || | | || |||||||| || ||||||| Sbjct 8364 CATTAATAATTCTCAAAACATTCCAACCTGCTAATTGACCAGCATCTTTTGTTGCTTGTC 8305 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 | || | ||| ||||||||||| |||||||||||||| ||| | ||| || || |||| Sbjct 8304 TCTGAGTATCATTAAAATATGCTGGAACAGTAATAACAGCAGATCCTACATCCTTACCAA 8245 Query 282492 TA 282493 || Sbjct 8244 TA 8243 Score = 111 bits (122), Expect = 1e-18 Identities = 197/289 (68%), Gaps = 19/289 (7%) Strand=Plus/Minus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCT--AAATACTC 86017 ||||||||||||||||| ||| || || ||| | || | | | || ||| | || Sbjct 8536 TCAAAATCTTCTCCTCCTAAAAAAGTGTTTCCATTTGTTG--ATTTTACTTGAAAGATTC 8479 Query 86018 CATTTGAGATATTCATTAACGAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTA 86077 ||| | || | || | |||| ||| ||||| || ||||||| |||||||| || Sbjct 8478 CATCTTTTATTTCCAAAATAGAAATATCAAATGTTCCTCCTCCTAAATCATAAACTGCTA 8419 Query 86078 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 86137 | ||| | |||| |||| | | || || || | ||| |||| Sbjct 8418 TATAACCTTCTCTTTTCTTAT---------------CAAGTCCATAAGCTAAAGCGGCTG 8374 Query 86138 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 86197 | |||||||||||||| ||| | | ||||| |||| || | || | ||| ||| | Sbjct 8373 CCGTTGGTTCATTAATAATTCTCAAAACATTCCAACCTGCTAATTGACCAGCATCTTTTG 8314 Query 86198 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGC 86246 ||||||||||||| | ||||||||||||||||| ||||||||||| || Sbjct 8313 TTGCTTGTCTCTGAGTATCATTAAAATATGCTGGAACAGTAATAACAGC 8265 >seq2 Length=31068 Score = 145 bits (160), Expect = 6e-29 Identities = 250/363 (69%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 400252 AAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 400311 |||||| | ||||| || | || || || ||| | | | | ||||| | ||||| Sbjct 30795 AAATTAGACGATGCTAACCATGCTGGTACTAAAAATAGTTCAGAGTGTACATTGATTTTA 30736 Query 400312 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGAT 400371 ||||| |||||||| || |||||||| ||| | | || ||| ||| | ||||| ||| Sbjct 30735 ACAGAAGGAGATTCTGCAAAAACATTAGCTGTTGCAGGTCTTTCGGTTGTAGGAAGGGAT 30676 Query 400372 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 400431 | ||||| |||||||| | | ||||||||||| ||||| || || || | |||| Sbjct 30675 AAGTATGGTGTTTTCCCTTTACGTGGAAAACTTTTAAATGTAAGAGAAGCATCTTATAAA 30616 Query 400432 aaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAAGGA 400491 |||| || ||||| ||| ||| || | ||||| ||| | ||| | |||| Sbjct 30615 CAAATAAGTGAAAATGAAGAAGTTAACTCATTAAAAAAGATTTTAGGATTGCAACATAAT 30556 Query 400492 AAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAA 400551 || ||||||||| | || ||| ||||||| | |||||||| | | |||||| Sbjct 30555 AAGGTTTATGATACGGTTTAATCATTAAGATATGGACATGTTATGATTATGACAGATCAA 30496 Query 400552 GATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCA 400611 ||| ||||||| | ||||| || || || || || || ||| | || ||||| ||| Sbjct 30495 GATTTTGATGGATCTCATATAAAGGGGTTGATTATTAACTTTTTTGATCATTTTTATCCA 30436 Query 400612 TCT 400614 ||| Sbjct 30435 TCT 30433 >seq630 Length=18121 Score = 113 bits (124), Expect = 3e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 131149 TAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTAT 131208 |||||||| |||||| |||| | |||||||||| |||||||||||||| ||||| || Sbjct 7460 TAATTTTAATAATAATGTAATACAGGTTGTAGTAGCAACAATAGCATTTGGAATGGGAAT 7401 Query 131209 TAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTA 131268 ||||||| ||||| ||| |||| |||||||| | || ||| ||||||| || Sbjct 7400 AGATAAACCAGATGTGAGATTTGTAATTCATTATTCAATACCAAAGTCACTTGAAGGATA 7341 Query 131269 TTATCAAGAAATTGGTAGAGCAGGT 131293 ||||||||||| || || || ||| Sbjct 7340 TTATCAAGAAACAGGAAGGGCTGGT 7316 >seq1 Length=15122 Score = 105 bits (116), Expect = 5e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 435126 ACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTAT 435185 ||||| |||||||||||| || | |||| |||||||||||||||||| |||||||||| Sbjct 10445 ACCTTATGAATTTTTCTTTCACGCTATGGGAGGTCGTGAAGGTATTATTGATACAGCTAT 10386 Query 435186 TAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAA 435245 ||||||| | || | ||| || ||||||||||| | | |||| | |||||| ||| Sbjct 10385 TAAAACTTCAGAGATTGGGTACATTCAAAGAAAGTTAATTAAGACTATGGAAGATGCTAA 10326 Query 435246 A 435246 | Sbjct 10325 A 10325 Score = 100 bits (110), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||||||||| || | |||||||| ||||||||| || | || ||| | |||||||| Sbjct 11834 AGGTAAAGAGGGAAGAATTAGAGGTTGTTTGATGGGTAAAAGAGTTGATTTTTCTGCACG 11775 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 ||| || |||||| ||||| ||| |||| || || || |||| ||||| | | | Sbjct 11774 TACTGTAATTACTCCTGATAGTAACATTGAACTTGATCAAATTGGATTTCCTATTAAGTT 11715 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCA 432466 || |||| | | || ||| |||| |||||| | ||||| | | | || | Sbjct 11714 AGCTAAAATTTTAACATTTCCTGAAAAAGTAACACCATTTAATAATCAAAAGTTACAAAA 11655 Query 432467 ATTAGTGAAAAATGGTAAAAGAGTATATCCAGGTGCCAATTTTGTAATCA-AACA 432520 || | || |||||| || | |||||||||||| |||| |||||||| |||| Sbjct 11654 ATGTATTAATAATGGTCCAACTGAATATCCAGGTGCTAATTATGTAATCAGAACA 11600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740566575493800