Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq580 129 8e-25 seq1043 125 1e-23 seq746 91.5 2e-13 >seq580 Length=1103 Score = 129 bits (142), Expect = 8e-25 Identities = 380/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || || ||| ||| | || ||||| || ||| | ||| ||||||||||| || Sbjct 1102 CAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGA 1043 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||| | | ||| | |||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1042 GCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAAT 983 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGT 39793 || ||||| || |||||||||| | ||| | ||| | ||||| ||| Sbjct 982 ATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAAC---TCTCATTTGAATGA 926 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG-CATTGTTTCTATAGCATT 39852 ||||| || | ||||||||||| || ||||| | | |||| | || ||| ||| | || Sbjct 925 ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTT 867 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC--AGACTATAC 39910 ||| | | || | ||| | ||| || | | || ||||| ||| ||| ||| Sbjct 866 AAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT-- 809 Query 39911 ATTTCTGAATGGATGTTTTCAATCG-CCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | || ||| | |||||||| | ||| || || | ||||| | | |||| Sbjct 808 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 750 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || | || | ||| | ||| ||||||| ||| || || ||||| || Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 690 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT-CGGGTGTCAATTTATTCC 40088 ||||| || || | ||| |||||| ||| | || |||| | || | || || | Sbjct 689 TGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAA 631 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC-GCCTCTGCC 40147 | ||||| |||||| | | ||| | ||||||| | |||| ||| ||| || |||| Sbjct 630 AATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCC 572 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTG 40179 ||||| ||||| ||| || || || |||| Sbjct 571 TTTTTATACATCACCCAAATCTCTGGAAATTG 540 >seq1043 Length=1839 Score = 125 bits (138), Expect = 1e-23 Identities = 383/578 (66%), Gaps = 18/578 (3%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || || || ||| ||| | || ||||| || ||| | ||| ||||||||||| || Sbjct 1838 CAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGA 1779 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||| | | ||| | ||||| | ||||||||| |||||||||||||| |||||||| Sbjct 1778 GCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAAT 1719 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGT 39793 || ||||| || |||||||||| | ||| | ||| | ||||| ||| Sbjct 1718 ATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATGA 1662 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG-CATTGTTTCTATAGCATT 39852 ||||| || | ||||||||||| || ||||| | | |||| | || ||| ||| | || Sbjct 1661 ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTT 1603 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC--AGACTATAC 39910 ||| | | || | ||| | ||| || | | || ||||| ||| ||| ||| Sbjct 1602 AAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT-- 1545 Query 39911 ATTTCTGAATGGATGTTTTCAATCG-CCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | || ||| | |||||||| | ||| || || | ||||| | | |||| Sbjct 1544 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 1486 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || | || | ||| | ||| ||||||| ||| || || ||||| || Sbjct 1485 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 1426 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT-CGGGTGTCAATTTATTCC 40088 ||||| || || || ||| |||||| ||| | || |||| | || | || || | Sbjct 1425 TGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAA 1367 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC-GCCTCTGCC 40147 | ||||| |||||| | | || | ||||||| | |||| ||| ||| || |||| Sbjct 1366 AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCC 1308 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGG 40185 ||||| ||||| ||| || || || |||| ||||| Sbjct 1307 TTTTTATACATCCCCCAAATCTCTGGAAATTGAATTGG 1270 >seq746 Length=365 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39346 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || ||||||||||| |||| |||||| || || ||||| |||| || || || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 39406 AGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTC 39465 | | || || |||| ||||| || ||| |||||||| |||| |||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 39466 TATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGT 39525 ||||| |||| || | |||||| || || | ||| || |||| |||||| | Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 39526 TAGAAACTCTTTTTCGATGTCTACGGCCTC 39555 | ||| || ||||| || || || || || Sbjct 162 AAAAAATTCCTTTTCTATTTCAACTGCTTC 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897637732000