Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1043 125 1e-23 seq580 125 1e-23 seq746 87.8 2e-12 >seq1043 Length=1839 Score = 125 bits (138), Expect = 1e-23 Identities = 370/555 (67%), Gaps = 24/555 (4%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||||||| ||| | ||||||||| || ||| | ||| ||||||||||| || Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 | | || | | || | |||||| | |||||||||||| || |||||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TGT 48317 ||| ||||| || |||||||| | | ||| | |||| || ||| || Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACT--CTCATTTGAATGA 1662 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG-CATTGTTTCTATAGCATT 48376 ||||| | |||||||||||||| ||||| | | |||| | || ||| ||| | || Sbjct 1661 ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTT 1603 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAA--AAGACTATAC 48434 ||| | || | | ||| ||| || | ||| ||||| || ||| ||| Sbjct 1602 AAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT-- 1545 Query 48435 ATTTCGGAGTGAATATTTTCAATTG-CCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | || |||| ||||||||| | ||| || || | ||||| | || ||||| Sbjct 1544 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 1486 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || || | || || ||| ||||| ||||| | ||| || || ||||| || Sbjct 1485 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 1426 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA----T 48609 ||||| || ||||| ||| |||||| ||| | || || | || ||||| | Sbjct 1425 TGCAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCAT----CCTC-GTTTAAAGTT 1371 Query 48610 TC-CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA-TGCCTC 48667 || | ||||| |||||| | | || | ||||||| | |||| |||||| || Sbjct 1370 TCAAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGACAGCAGA 1312 Query 48668 TGCTTTTTTATACAT 48682 ||| ||||||||||| Sbjct 1311 TGCCTTTTTATACAT 1297 >seq580 Length=1103 Score = 125 bits (138), Expect = 1e-23 Identities = 370/555 (67%), Gaps = 24/555 (4%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||||||| ||| | ||||||||| || ||| | ||| ||||||||||| || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 | | || | | || | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG--TGT 48317 ||| ||||| || |||||||| | | ||| | |||| || ||| || Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACT--CTCATTTGAATGA 926 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG-CATTGTTTCTATAGCATT 48376 ||||| | |||||||||||||| ||||| | | |||| | || ||| ||| | || Sbjct 925 ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTT 867 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAA--AAGACTATAC 48434 ||| | || | | ||| ||| || | ||| ||||| || ||| ||| Sbjct 866 AAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT-- 809 Query 48435 ATTTCGGAGTGAATATTTTCAATTG-CCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | || |||| ||||||||| | ||| || || | ||||| | || ||||| Sbjct 808 GTCTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAA 750 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || || | || || ||| ||||| ||||| | ||| || || ||||| || Sbjct 749 CATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGC 690 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA----T 48609 ||||| || |||| ||| |||||| ||| | || || | || ||||| | Sbjct 689 TGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCAT----CCTC-GTTTAAAGTT 635 Query 48610 TC-CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA-TGCCTC 48667 || | ||||| |||||| | | ||| | ||||||| | |||| |||||| || Sbjct 634 TCAAAATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCC-AAATGACAGCAGA 576 Query 48668 TGCTTTTTTATACAT 48682 ||| ||||||||||| Sbjct 575 TGCCTTTTTATACAT 561 >seq746 Length=365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 47870 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||||| || ||||||||||| |||| |||||| || || |||||||||| ||||| || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 47930 AACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTC 47989 | || |||||||| ||||| || ||| | |||||| |||| ||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 47990 TATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGT 48049 || || |||| || | |||||| || || | ||| || |||| |||||| | Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 48050 AAGAAACTCTTGTTCGAT 48067 || ||| || | ||| || Sbjct 162 AAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657511632000