Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087885.1_202017-04-12] 1,300 sequences; 4,570,278 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq580 161 1e-34 seq1043 154 2e-32 seq746 91.5 2e-13 >seq580 Length=1103 Score = 161 bits (178), Expect = 1e-34 Identities = 388/574 (68%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||||||| ||| | |||||||| || ||| | ||| ||||||||||| || Sbjct 1103 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1044 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||| | | || | |||||| ||||||||||| || || |||||||| |||||||| Sbjct 1043 AGCAGGAAGAATACCTCTCTTTTTCAGCCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 984 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 ||| ||||| ||| || ||||| | | ||| | |||| ||| |||||| Sbjct 983 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTGTCAAAACTCTCATTTGAATGAAT 924 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG-CATTGTTTCTATAGCATTAA 46867 ||| | |||||||||||||||||||||| | | |||| | || ||| ||| | |||| Sbjct 923 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAA 865 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAA--AAGACTATACAT 46925 | | || | | ||| | ||| || | | || ||||| || ||| ||| | Sbjct 864 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 807 Query 46926 TTCTGAATGAATGTTTTCAATAG-CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 || ||||| |||||||||| ||| || || | ||||| | | |||| | Sbjct 806 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 748 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 | || | || || ||| ||||| | ||||| | ||| || || ||||| || | Sbjct 747 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 688 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA----TTC 47100 |||| || || | ||| |||||| ||| | || ||||| || ||||| ||| Sbjct 687 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATC----CTC-GTTTAAAGTTTC 633 Query 47101 -CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC-GCCTCTG 47158 | ||||| |||||| | | ||| | ||||||| | ||||| |||||| || || Sbjct 632 AAAATCATTAGCATCTTTAGTAAAATCAATTTCTTCAACAGTCCA-AATGACAGCAGATG 574 Query 47159 CTTTTTTATACATATTCCATATATCACGATATTG 47192 | ||||||||||| ||| || || || |||| Sbjct 573 CCTTTTTATACATCACCCAAATCTCTGGAAATTG 540 >seq1043 Length=1839 Score = 154 bits (170), Expect = 2e-32 Identities = 390/580 (67%), Gaps = 20/580 (3%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||||||| ||| | |||||||| || ||| | ||| ||||||||||| || Sbjct 1839 ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAG 1780 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||| | | || | ||||| | ||||||||| || || |||||||| |||||||| Sbjct 1779 AGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAA 1720 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 ||| ||||| ||| || ||||| | | ||| | |||| ||| |||||| Sbjct 1719 TATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGAAT 1660 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG-CATTGTTTCTATAGCATTAA 46867 ||| | |||||||||||||||||||||| | | |||| | || ||| ||| | |||| Sbjct 1659 CCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAA 1601 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAA--AAGACTATACAT 46925 | | || | | ||| | ||| || | | || ||||| || ||| ||| | Sbjct 1600 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GT 1543 Query 46926 TTCTGAATGAATGTTTTCAATAG-CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 || ||||| |||||||||| ||| || || | ||||| | | |||| | Sbjct 1542 CTCATTATGAACATTTTCAATAGAACAT-TGTAAACTATAAAATGACTTCACTTCTAACA 1484 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 | || | || || ||| ||||| | ||||| | ||| || || ||||| || | Sbjct 1483 TGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAGGCTG 1424 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA----TTC 47100 |||| || || || ||| |||||| ||| | || ||||| || ||||| ||| Sbjct 1423 CAAAGAAAGCTAACACAGTTTTAATGAAAAACTTCTCATC----CTC-GTTTAAAGTTTC 1369 Query 47101 -CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC-GCCTCTG 47158 | ||||| |||||| | | || | ||||||| | ||||| |||||| || || Sbjct 1368 AAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCA-AATGACAGCAGATG 1310 Query 47159 CTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 | ||||||||||| ||| || || || |||| || || Sbjct 1309 CCTTTTTATACATCCCCCAAATCTCTGGAAATTGAATTGG 1270 >seq746 Length=365 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 46359 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||||| || ||||||||||| |||| |||||| || || |||||||||| || || || Sbjct 342 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 283 Query 46419 AGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTC 46478 | | || |||||||| ||||| || ||| | |||||| |||| ||||| Sbjct 282 TGGAGTGTTGTAAATTTTAGACTCACCTAACTCATAAAGTAATCTATCAGCAATAAATTC 223 Query 46479 TATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGT 46538 || ||| |||| || | |||||| || || | ||| || |||| |||||| | Sbjct 222 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 163 Query 46539 AAGAAACTCTTGTTCAAT 46556 || ||| || | ||| || Sbjct 162 AAAAAATTCCTTTTCTAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712922814816000