Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq521 105 1e-17
seq444 104 5e-17
seq249 87.8 4e-12
seq44 87.8 4e-12
>seq521
Length=29782
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||||| ||||| ||||||| | |||||||||||||||
Sbjct 8865 TGCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAG 8806
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 8805 CCCCACGTTGGGC 8793
>seq444
Length=97904
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||
Sbjct 25732 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAGC 25791
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 25792 CCCACGTTGGGC 25803
>seq249
Length=1445
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||| | ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 863 TGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 922
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 923 CCCCACGTTGGGC 935
>seq44
Length=71667
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147
||| || || || || || || | ||||||||| ||| |||| |||| |||| ||
Sbjct 719 TCAGGCCTCGACCTCCGAGCTTTTTGGAAAAGTAACAGAGGTTCCGCAAAACGAAACAAC 778
Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207
|| |||||||| ||| || |||||||||||||| || ||| |||| ||||| ||
Sbjct 779 GCCATTTTATCCCCGTTCACCATATGGTGTTGCAAAGCTCTACTCTTATTGGATAGTGAA 838
Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267
||| || || || | ||||| | |||| || ||| || | ||||| ||||| ||
Sbjct 839 AAACTATCGGGAAGCATATGGCCTTTTTGCTTGCAACGGAATCTTGTTCAACCACGAAAG 898
Query 61268 TCC 61270
||
Sbjct 899 CCC 901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057815705337560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |