Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq521 105 1e-17 seq444 104 5e-17 seq249 87.8 4e-12 seq44 87.8 4e-12 >seq521 Length=29782 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||| ||||| ||||||| | ||||||||||||||| Sbjct 8865 TGCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAG 8806 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 8805 CCCCACGTTGGGC 8793 >seq444 Length=97904 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| ||||| ||||||| | |||||||||||||||| Sbjct 25732 GCCCGGCTAGCTCAGTCGGTAGAGCGCGAGACTCTTAATCTCGCGGTCGTGGGTTCGAGC 25791 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25792 CCCACGTTGGGC 25803 >seq249 Length=1445 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 863 TGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 922 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 923 CCCCACGTTGGGC 935 >seq44 Length=71667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||| || || || || || || | ||||||||| ||| |||| |||| |||| || Sbjct 719 TCAGGCCTCGACCTCCGAGCTTTTTGGAAAAGTAACAGAGGTTCCGCAAAACGAAACAAC 778 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || |||||||| ||| || |||||||||||||| || ||| |||| ||||| || Sbjct 779 GCCATTTTATCCCCGTTCACCATATGGTGTTGCAAAGCTCTACTCTTATTGGATAGTGAA 838 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 ||| || || || | ||||| | |||| || ||| || | ||||| ||||| || Sbjct 839 AAACTATCGGGAAGCATATGGCCTTTTTGCTTGCAACGGAATCTTGTTCAACCACGAAAG 898 Query 61268 TCC 61270 || Sbjct 899 CCC 901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057815705337560