Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq602 149 6e-31
>seq602
Length=19998
Score = 149 bits (164), Expect = 6e-31
Identities = 383/575 (67%), Gaps = 14/575 (2%)
Strand=Plus/Plus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
||||| || || ||| ||||| ||||||||||| ||||| || ||||| ||||| ||
Sbjct 6834 AGACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTA 6893
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
| ||| |||||| || || || |||| |||||| || || || |||||||| ||||||
Sbjct 6894 AGCCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAG 6953
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG--TACGTCGCGTCTTTGT 17138
||||| ||||| || | ||||| || | | || || ||| | | || ||| |
Sbjct 6954 AATATGCCCTCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGAT 7011
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
| |||||| ||| |||| | |||||||| | |||| | || ||| ||||
Sbjct 7012 TTGCAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGG 7071
Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258
| || || ||||| ||||| ||| ||||| || || || || ||| |
Sbjct 7072 CGTTGAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAAT 7131
Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318
|||| || || || || || ||||| || || || ||||||||| | || || || |
Sbjct 7132 ACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTG 7191
Query 17319 CTATTTGAACTTCCACGTAG--AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
||||| || || | ||| || || | ||| |||||| || || || || |||
Sbjct 7192 GGATTTGCACCTC--CCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGA 7249
Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT--GTAAGA-AC 17433
|| || ||||| ||||| | || || |||| ||| || || | ||| ||
Sbjct 7250 GGCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTC--CCCGTCATTCAGAGAC 7307
Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493
|| ||| | ||| ||| || || | ||||| |||||| ||||| || ||| ||
Sbjct 7308 GC-CCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAAC 7366
Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATT 17528
| ||||||||| | | ||| || || | ||||
Sbjct 7367 CGACTTTTTATAAAAAAGCCAGATTTCCTCATATT 7401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517541640776160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |