Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq602 149 6e-31 >seq602 Length=19998 Score = 149 bits (164), Expect = 6e-31 Identities = 383/575 (67%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||| ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 6834 AGACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTA 6893 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| |||||| || || || |||| |||||| || || || |||||||| |||||| Sbjct 6894 AGCCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAG 6953 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG--TACGTCGCGTCTTTGT 17138 ||||| ||||| || | ||||| || | | || || ||| | | || ||| | Sbjct 6954 AATATGCCCTCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGAT 7011 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | |||||| ||| |||| | |||||||| | |||| | || ||| |||| Sbjct 7012 TTGCAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGG 7071 Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || || ||||| ||||| ||| ||||| || || || || ||| | Sbjct 7072 CGTTGAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAAT 7131 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| || || || || || ||||| || || || ||||||||| | || || || | Sbjct 7132 ACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTG 7191 Query 17319 CTATTTGAACTTCCACGTAG--AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 ||||| || || | ||| || || | ||| |||||| || || || || ||| Sbjct 7192 GGATTTGCACCTC--CCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGA 7249 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGT--GTAAGA-AC 17433 || || ||||| ||||| | || || |||| ||| || || | ||| || Sbjct 7250 GGCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTC--CCCGTCATTCAGAGAC 7307 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 || ||| | ||| ||| || || | ||||| |||||| ||||| || ||| || Sbjct 7308 GC-CCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAAC 7366 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 | ||||||||| | | ||| || || | |||| Sbjct 7367 CGACTTTTTATAAAAAAGCCAGATTTCCTCATATT 7401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541640776160