Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq602 176 5e-39 >seq602 Length=19998 Score = 176 bits (194), Expect = 5e-39 Identities = 419/630 (67%), Gaps = 10/630 (2%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 |||||| || || ||| |||||| || |||||||| ||||| || |||||||||||||| Sbjct 6833 TAGACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGT 6892 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | ||| ||||| || || || |||| ||| || || || ||||| ||||| ||||| Sbjct 6893 AAGCCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAA 6952 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 |||||| |||||||| | ||||| || | | || | || | | |||||| ||| Sbjct 6953 GAATATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATT 7012 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 |||||| ||| |||||| |||||||| || || | | || ||| ||||| Sbjct 7013 TGCAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGC 7072 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 || |||||||| ||||| |||| ||||| || |||||||| | || Sbjct 7073 GTTGAACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATA 7132 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 ||| || || || || || || || || || || || || ||| | |||||||| | Sbjct 7133 CATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGG 7192 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 ||||| || ||| ||| || | | | || ||||| || || || || || Sbjct 7193 GATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGC 7252 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAAT---ATTTTTCGTCAGATGTAAGAATATG 16674 |||||||| ||||| | ||| || |||| || ||||| | ||| Sbjct 7253 TGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCA---TTCAGAGACGC 7309 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||||| ||| ||| || || | ||||| ||||| |||||| ||| ||| || | Sbjct 7310 CCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGA 7369 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCTAA 16794 ||||||||| | ||| || || | |||| || ||||| | ||| ||| | || Sbjct 7370 CTTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATC--TGGAA 7427 Query 16795 GGAT--TCCTTTAACACGGGTTCATCTTCC 16822 |||| || | |||| ||||| || ||| Sbjct 7428 GGATTATCTCTCAACAAAGGTTCCTCCTCC 7457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410487679840