Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq602 206 3e-48 seq113 125 8e-24 >seq602 Length=19998 Score = 206 bits (228), Expect = 3e-48 Identities = 405/594 (68%), Gaps = 15/594 (3%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| |||||||||||||||||||| || | ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || || |||||||| | |||||| |||| ||||| || || |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC-TGT-CATGT 24311 || || || ||||| ||||| |||| |||| ||| | || || || | | || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTT 7013 Query 24312 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 ||||| || |||||| | ||| || |||| | | ||| || || || || Sbjct 7014 GCAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCG 7073 Query 24369 TTAAAGAGATAGtttttttCATTACT----ATCTTTAACATATGTATCAATCAAAAGACT 24424 || | | | |||| | | || ||| || |||||| ||||||| ||| Sbjct 7074 TTGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGA 7129 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||| || ||||| || ||||| || ||||| || ||||| || | | |||||| Sbjct 7130 ATACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTC 7189 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | || || || || || ||| || | ||||||||||||| || ||||| || Sbjct 7190 TGGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGA 7249 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 24604 |||||||||||| ||||| || || ||||||| ||| | | || Sbjct 7250 GGCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGC 7309 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||||| | | ||| || || | ||||| ||||| || ||||| || || || | | Sbjct 7310 CCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGA 7369 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 ||||||||| | | |||||| || | ||||| ||||||||||| || ||||| Sbjct 7370 CTTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 125 bits (138), Expect = 8e-24 Identities = 702/1113 (63%), Gaps = 23/1113 (2%) Strand=Plus/Plus Query 53522 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 53581 |||| ||||| | ||||| || ||||| || || |||||||||||| |||| || Sbjct 4049 AACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGC 4108 Query 53582 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATT 53641 ||| || | |||||| | || | ||| ||||| ||||| || ||| | | Sbjct 4109 CTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTACC 4168 Query 53642 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT---ACAAACATG 53698 |||||| | |||| | || | ||||||||| || || || | |||||| Sbjct 4169 ACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATC 4228 Query 53699 TTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTA 53756 | |||||| || || || |||||||||| ||||||| | || | || || | Sbjct 4229 GGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG--TACTGGA 4286 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 | || || || || | || | |||||||| || | |||| ||||||| |||| Sbjct 4287 TGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTG 4346 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 ||| || | ||| ||| | || ||| ||||||| || ||||| | || | || | || Sbjct 4347 CGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAA 4406 Query 53877 TCGCTTTCCAGAC------GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 53930 | || | ||||| | || | | || ||| || | || | ||| | Sbjct 4407 TGGCATACCAGAGCTTTTGGGCAGGGATCGTT-TTAC-GACCAAGACCTTTGGCCTCATA 4464 Query 53931 CGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 53990 | | | ||| || ||||||||| ||||||| | | ||| || ||| | Sbjct 4465 TGAA----GCATATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGT 4520 Query 53991 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 54050 ||| ||||| | | | |||| || || | || |||||||||||| || ||||| | Sbjct 4521 CATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGG 4580 Query 54051 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 | ||||| || || ||| ||||| ||| | | || || ||||| ||| || | Sbjct 4581 GTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCT 4640 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 | | ||| | ||| | | || ||||| ||||| || ||||| || || | | | | Sbjct 4641 TTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGC 4700 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 |||| ||||| || || || ||||| | |||| || || | ||||| || | | || Sbjct 4701 CAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCA 4760 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 54290 | || | ||||| || || ||| || || | ||||| ||| ||| | | Sbjct 4761 TGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTA 4820 Query 54291 TATTACTAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 ||||| || ||| ||||| | ||||| || || || ||||| ||| ||| Sbjct 4821 TATTATGGATATGA-AGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTTC 4879 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 | || ||||| || || || ||| || |||| || | ||||||| || Sbjct 4880 AGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGAA 4939 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | ||| | || || || |||||||| | ||| || || || || || ||| Sbjct 4940 AGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGC 4999 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTAC 54528 | ||| | | ||| ||||| ||||| || ||||| | || || | ||||| || | Sbjct 5000 TGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCG-TGAATGCCAAG 5058 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 || || | ||| | || | ||| || | || || | |||| | ||| |||||| Sbjct 5059 CGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTTGCCCCTGATTCTCAGCAG 5118 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621 || || || | |||||||| |||||||| Sbjct 5119 ATACGAACGCTCAAGGGTTTTAAATCCAAAATA 5151 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-AT--AACTCGGATCTGCT 52924 || |||| ||||||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 52925 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 52984 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 52985 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 53044 ||||| ||||||||||||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 53045 A 53045 | Sbjct 3569 A 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717058029760