Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq602 233 2e-56 seq33 107 2e-18 seq49 105 7e-18 seq612 102 8e-17 >seq602 Length=19998 Score = 233 bits (258), Expect = 2e-56 Identities = 405/586 (69%), Gaps = 2/586 (0%) Strand=Plus/Minus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 ||||||||||| || || |||| ||| || |||| | || |||||| | | || Sbjct 7420 TTCGTGATTTTTCCAATCAAATATGAGGAAATCTGGCTTTTTTATAAAAAGTCGGTTGCT 7361 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG 116725 || |||||||| ||||| |||||||||||||| ||||| | | | |||| | || Sbjct 7360 TCCTTCTGGACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACCCATTGGGCGTCTCTG 7301 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 || ||| || |||||||| ||| ||||| |||||||||| || ||| ||| || Sbjct 7300 AATGACGGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTTGCAGCCTCCGATGGA 7241 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || || || || ||| | || | || || ||| ||||||||| | | ||||| || Sbjct 7240 ATTGTAAATGAAAATTTAGTTGTTCGCTTTGCTAGGGAGGTGCAAATCCCAGAGGCTCGT 7181 Query 116846 TGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC 116905 | ||| ||||| || || ||| ||||| || | || || || |||||||| || Sbjct 7180 TTCTTTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGAGATGTATTCCCTTCTG 7121 Query 116906 ATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACG 116965 || ||||| || | ||| | | ||||| || ||||| ||||||||||| Sbjct 7120 ATTGACACATATATTCGCGATGAGCAGGAGCGTCTAAAATTGTTCAACGCCATCGAATAT 7061 Query 116966 ATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCC 117025 || || || | || | || ||| | ||||| || |||||| || ||| ||| Sbjct 7060 ATCCCTAGCATTGAAAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAATCCAGATGCC 7001 Query 117026 GCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAG 117084 |||| || | ||||| || || || || || |||||| | |||||||| ||| | Sbjct 7000 CCCTTTTCGCAGAGACTGGTTGCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCG 6941 Query 117085 TTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144 ||| || ||||| |||||| | || || ||||| || ||||| || || ||||| ||| Sbjct 6940 TTT-GCAGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAA 6882 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 |||||| ||| || ||||||||||| ||| ||| ||||| ||| Sbjct 6881 CGAGCTGATCAGTAGAGACGAGGGTCTACATACCGAGTTTGCTTGT 6836 >seq33 Length=72831 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || || || || || || || || |||||||| |||| || ||| || Sbjct 31872 AAGATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCC 31931 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || |||| || || ||||| |||||| | || Sbjct 31932 AGTGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGAT 31991 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | || || || ||||| || || | || || || ||||||| Sbjct 31992 CAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGACTAC 32051 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||||||| | || || ||||| || Sbjct 32052 AATATCCAGAAGGAGTCTACTCTTCATCTTGT 32083 >seq49 Length=10291 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||| ||||| | || || ||| | | Sbjct 10177 ATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTCA 10118 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | ||| ||||||| | |||||||| || || || | |||||| Sbjct 10117 GACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCAG 10058 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | || || || |||||||| || | | || ||| ||||| || Sbjct 10057 CAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAAT 9998 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || || ||| | || || ||||||||| || Sbjct 9997 ATTCAAAAAGAGTCAACCCTCCATCTAGTGCTG 9965 >seq612 Length=74583 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || |||||||| ||||| || |||| || || | | Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | ||| | ||||| | ||||| || || || || | ||||| Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||||||||| || || | | || ||| || || || Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| ||||||| ||||| ||| Sbjct 29727 TATTCAGAAGGAGTCCACGCTCCATCTTGTG 29757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215258573120