Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq49 122 1e-22 seq612 96.9 5e-15 seq33 96.9 5e-15 >seq49 Length=10291 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | || ||||| || || ||||| || || |||| ||||| | Sbjct 10180 ACCATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCT 10121 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| |||| || ||||| ||||| |||||||| ||||| ||||| Sbjct 10120 TCAGACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGAC 10061 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | ||||| ||||| ||||| || | |||||| | |||| | || ||| Sbjct 10060 CAGCAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTAT 10001 Query 124716 AATATTCAAAAAGAATCAAC 124735 |||||||||||||| ||||| Sbjct 10000 AATATTCAAAAAGAGTCAAC 9981 >seq612 Length=74583 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||||| || ||||| || || || | || | || | Sbjct 29547 AATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTC 29606 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || |||||||| ||||| || ||||| || || || || || Sbjct 29607 GGACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCA 29666 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||||||||| ||||| | |||||| | ||||| | |||||||| Sbjct 29667 GCAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAA 29726 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 29727 TATTCAGAAGGAGTCCAC 29744 >seq33 Length=72831 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || || || ||| | ||| | ||| | | | Sbjct 31875 ATGCAAATCTTTGTTAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTAGAATCCAGT 31934 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||| || || || || || ||||| Sbjct 31935 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGATCAG 31994 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| ||||| || | |||||| | || ||| | || || ||| Sbjct 31995 CAGCGCCTGATTTTTGCCGGAAAGCAGCTTGAGGATGGACGTACACTTTCCGACTACAAT 32054 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || || || || ||| | ||| | || | || | || |||||| ||||| Sbjct 32055 ATCCAGAAGGAGTCTACTCTTCATCTTGTACTCCGACTCCGTGGTGGTGGCAAAAA 32110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450220761600