Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 seq33 93.3 4e-14 >seq49 Length=10291 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||| | |||| || |||||||||||||| || || || Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATA----GTC 10006 Query 118572 ATAGTGCG--CGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | || ||| | | |||||| ||||| |||||||| | || || || ||||| || || Sbjct 10007 AGAGAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGG 10066 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 ||||| || || |||||| |||||||| || || | ||| | |||||| | || Sbjct 10067 CGGTATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTC 10126 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || | || | ||||| || || || ||||| || || || ||||||| Sbjct 10127 AACTTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCATGG 10179 >seq33 Length=72831 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 |||||||| || || || ||||| ||| | |||| ||| |||||| ||||| |||| Sbjct 32071 GTAGACTCCTTCTGGATATTGTAGTCGG--AAAGTGTACGTCCATCCTCAAGCTGCTTTC 32014 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | || | || || |||||||||||||| || || |||||||| ||| ||| || | Sbjct 32013 CGGCAAAAATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCT 31954 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | |||||| || || ||||||| || | || || || || || | Sbjct 31953 TGACATTCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGG 31894 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || ||||| || ||||| Sbjct 31893 TCTTAACAAAGATTTGCAT 31875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827164167504