Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq612 111 2e-19
seq33 104 3e-17
seq180 102 9e-17
seq49 100 3e-16
seq221 91.5 2e-13
seq578 84.2 3e-11
>seq612
Length=74583
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||| | | ||| | ||| | ||| | ||| |||||| |||||||| |||||||
Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || | | || || ||||| || || || || || || ||||||||||| | ||
Sbjct 29715 GAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGG 29656
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | |||||||| |||||| || || | || | | ||||| || |||||
Sbjct 29655 AATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCAC 29596
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||| ||| ||||| |||||||| || || || ||||| |||||||||
Sbjct 29595 TTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547
>seq33
Length=72831
Score = 104 bits (114), Expect = 3e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| || | || || || | || || |||||||| || || ||
Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
|| || |||||||| |||| || | | |||||| || ||| | || | ||||
Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCT-TGAATCTTGGCCTTGACAT 31948
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
|| | | ||||| || ||||| || |||| |||||||| || || || || ||||| |
Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888
Query 43171 CAAAGATTTGCATTTTTAC 43189
||||||||||||| || ||
Sbjct 31887 CAAAGATTTGCATCTTGAC 31869
>seq180
Length=2461
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 348 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 289
Query 60124 TATACTACCGAGGA 60137
||||||||||||||
Sbjct 288 TATACTACCGAGGA 275
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 1365 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1306
Query 60124 TATACTACCGAGGA 60137
||||||||||||||
Sbjct 1305 TATACTACCGAGGA 1292
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 2382 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 2323
Query 60124 TATACTACCGAGGA 60137
||||||||||||||
Sbjct 2322 TATACTACCGAGGA 2309
>seq49
Length=10291
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||||| | | || ||| | ||| | || ||| ||||||||||| || ||||
Sbjct 9950 TCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGA 10009
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || | | || || |||||||| ||||| ||||| || || |||||||| | |||
Sbjct 10010 GAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGG 10069
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | || ||||| ||||||||| || | | | | ||||| ||||| ||
Sbjct 10070 TATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAAC 10129
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||| ||||| || || || || || || |||||||||||
Sbjct 10130 TTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177
>seq221
Length=44452
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/101 (81%), Gaps = 8/101 (8%)
Strand=Plus/Minus
Query 60042 AAATTAACGTTTATG----AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCC 60097
|||| || ||||||| ||||| | || |||||| |||||||||||| |||| |||
Sbjct 31124 AAATGAATGTTTATGGAATAAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCC 31069
Query 60098 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138
|||||||||||||| ||||| |||||||||||| || |||
Sbjct 31068 GCGTGACAGGCGGATATACTAACCACTATACTAAGGAAGAT 31028
>seq578
Length=26444
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/74 (86%), Gaps = 4/74 (5%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | || |||||| |||||||||||| |||| ||||||||||||||||| ||||
Sbjct 1536 AAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCCGCGTGACAGGCGGATATAC 1591
Query 60117 TCACCACTATACTA 60130
| ||||||||||||
Sbjct 1592 TAACCACTATACTA 1605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571813225595360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |