Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq612 111 2e-19 seq33 104 3e-17 seq180 102 9e-17 seq49 100 3e-16 seq221 91.5 2e-13 seq578 84.2 3e-11 >seq612 Length=74583 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||| | ||| | ||| |||||| |||||||| ||||||| Sbjct 29775 TCCTCCGCGAAGACGAAGCACAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGA 29716 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | | || || ||||| || || || || || || ||||||||||| | || Sbjct 29715 GAGTGTTCTTCCATCCTCAAGCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGG 29656 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| |||||| || || | || | | ||||| || ||||| Sbjct 29655 AATTCCTTCCTTGTCTTGGATTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCAC 29596 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||| ||||| |||||||| || || || ||||| ||||||||| Sbjct 29595 TTCGAGCGTAATGGTCTTGCCCGTAAGTGTTTTGACAAAAATTTGCATT 29547 >seq33 Length=72831 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | || || || | || || |||||||| || || || Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || |||||||| |||| || | | |||||| || ||| | || | |||| Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCT-TGAATCTTGGCCTTGACAT 31948 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| || ||||| || |||| |||||||| || || || || ||||| | Sbjct 31947 TCTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAA 31888 Query 43171 CAAAGATTTGCATTTTTAC 43189 ||||||||||||| || || Sbjct 31887 CAAAGATTTGCATCTTGAC 31869 >seq180 Length=2461 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 348 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 289 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 288 TATACTACCGAGGA 275 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1365 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 1306 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 1305 TATACTACCGAGGA 1292 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 2382 TTCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 2323 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 2322 TATACTACCGAGGA 2309 >seq49 Length=10291 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | | || ||| | ||| | || ||| ||||||||||| || |||| Sbjct 9950 TCCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGA 10009 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | | || || |||||||| ||||| ||||| || || |||||||| | ||| Sbjct 10010 GAGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGG 10069 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||||||||| || | | | | ||||| ||||| || Sbjct 10070 TATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAAC 10129 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| ||||| || || || || || || ||||||||||| Sbjct 10130 TTCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCAT 10177 >seq221 Length=44452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/101 (81%), Gaps = 8/101 (8%) Strand=Plus/Minus Query 60042 AAATTAACGTTTATG----AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCC 60097 |||| || ||||||| ||||| | || |||||| |||||||||||| |||| ||| Sbjct 31124 AAATGAATGTTTATGGAATAAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCC 31069 Query 60098 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 |||||||||||||| ||||| |||||||||||| || ||| Sbjct 31068 GCGTGACAGGCGGATATACTAACCACTATACTAAGGAAGAT 31028 >seq578 Length=26444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/74 (86%), Gaps = 4/74 (5%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | || |||||| |||||||||||| |||| ||||||||||||||||| |||| Sbjct 1536 AAAAACTCTC-CCTCGG---GGAATCGAACCCCGGTCACCCGCGTGACAGGCGGATATAC 1591 Query 60117 TCACCACTATACTA 60130 | |||||||||||| Sbjct 1592 TAACCACTATACTA 1605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813225595360