Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq602 183 3e-41
>seq602
Length=19998
Score = 183 bits (202), Expect = 3e-41
Identities = 552/842 (66%), Gaps = 18/842 (2%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
||||||||||| | |||| |||||||||| || || |||||||| | |||||
Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063
||||| |||||||| || |||| | ||| ||| | || |||| | | |
Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCAG 6664
Query 16064 AA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122
|| |||||| || || || |||||||| |||||||| | ||||| || ||||
Sbjct 6665 AAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAG 6724
Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182
| || || | | || |||||| | ||| ||| |||| || ||| ||| ||
Sbjct 6725 GTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAAT 6784
Query 16183 ---ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239
|| | | | | || | ||| ||| | ||| | | || ||||||
Sbjct 6785 GGCATATATAATCGCCGGATCTGCCGGC---TTTTTCAGGTGGGAATGTAATAGACAAGC 6841
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299
||| || ||| | || ||||| ||||| || | |||||| ||||| ||||| || ||
Sbjct 6842 AAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGG 6901
Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359
||| || || || ||||| |||||||| || || ||||| || || ||||||||||| ||
Sbjct 6902 CATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCC 6961
Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419
|||||||||||||||||||||| || || | | || | | || | |||||
Sbjct 6962 CTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021
Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479
|| |||||| || ||||||| || || | || | || || || || || ||
Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081
Query 16480 ATAAtttttttCT-TTGCT-ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537
| || || |||| ||| |||||| || || || || | |||||| ||
Sbjct 7082 TT--TTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCTCA 7139
Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597
||||| ||||| ||||| || || || || |||||| | | ||| || | |||||
Sbjct 7140 GAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTTGC 7199
Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657
|| || ||| | | |||| ||||| || || ||||||||| |||||||||
Sbjct 7200 ACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAAAA 7259
Query 16658 AACGCAAGTATGTGTTTAATAAAAt---ttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714
|| || | | ||| ||||||| || ||| || | | || ||| |
Sbjct 7260 AAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCAT-TCAGAG--ACGCCCAATGG 7316
Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774
| | ||| ||||| | || |||||||| || ||||| || |||||||| | |||||||
Sbjct 7317 GTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTA 7376
Query 16775 TA 16776
||
Sbjct 7377 TA 7378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462508461783200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |