Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq602 183 3e-41 >seq602 Length=19998 Score = 183 bits (202), Expect = 3e-41 Identities = 552/842 (66%), Gaps = 18/842 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| | |||| |||||||||| || || |||||||| | ||||| Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| |||||||| || |||| | ||| ||| | || |||| | | | Sbjct 6606 TCCATGAAATCAAACGGGTTTTCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCAG 6664 Query 16064 AA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 || |||||| || || || |||||||| |||||||| | ||||| || |||| Sbjct 6665 AAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTAG 6724 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | || || | | || |||||| | ||| ||| |||| || ||| ||| || Sbjct 6725 GTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAAT 6784 Query 16183 ---ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 || | | | | || | ||| ||| | ||| | | || |||||| Sbjct 6785 GGCATATATAATCGCCGGATCTGCCGGC---TTTTTCAGGTGGGAATGTAATAGACAAGC 6841 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| || ||| | || ||||| ||||| || | |||||| ||||| ||||| || || Sbjct 6842 AAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGG 6901 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || || ||||| |||||||| || || ||||| || || ||||||||||| || Sbjct 6902 CATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCC 6961 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcca 16419 |||||||||||||||||||||| || || | | || | | || | ||||| Sbjct 6962 CTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021 Query 16420 ttttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 || |||||| || ||||||| || || | || | || || || || || || Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081 Query 16480 ATAAtttttttCT-TTGCT-ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | || || |||| ||| |||||| || || || || | |||||| || Sbjct 7082 TT--TTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCTCA 7139 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 ||||| ||||| ||||| || || || || |||||| | | ||| || | ||||| Sbjct 7140 GAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTTGC 7199 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 || || ||| | | |||| ||||| || || ||||||||| ||||||||| Sbjct 7200 ACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAAAA 7259 Query 16658 AACGCAAGTATGTGTTTAATAAAAt---ttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 || || | | ||| ||||||| || ||| || | | || ||| | Sbjct 7260 AAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCAT-TCAGAG--ACGCCCAATGG 7316 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 | | ||| ||||| | || |||||||| || ||||| || |||||||| | ||||||| Sbjct 7317 GTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTA 7376 Query 16775 TA 16776 || Sbjct 7377 TA 7378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508461783200