Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq612 102 6e-17 seq33 89.7 4e-13 >seq612 Length=74583 Score = 102 bits (112), Expect = 6e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || |||||| |||||||||||| || || || ||| | | || || | Sbjct 29755 CAAGATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCAA 29696 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || || || |||| ||||| ||||| ||||| | || |||||||| | Sbjct 29695 GCTGTTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGA 29636 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||||| || | | | | ||||| | |||||| || | ||||| ||||||| Sbjct 29635 TTTTCTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGC 29576 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || ||||| |||||||| Sbjct 29575 CCGTAAGTGTTTTGACAAAAATTTGCAT 29548 >seq33 Length=72831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||||||| ||| || | || || || || |||||||| || Sbjct 32066 CTCCTTCTGGATATTGTAGTCGGAAAGTGTACGTCCATCCTCAAGCTGCTTTCCGGCAAA 32007 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| || ||||| || | |||||||| || ||| || ||| || Sbjct 32006 AATCAGGCGCTGCTGATCGGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGACATT 31947 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || ||||| | || || ||||| || || || ||||| || Sbjct 31946 CTCAATGGTGTCACTGGATTCTACCTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTAAC 31887 Query 45325 AAAGATTTGCATGTTGCCT 45343 |||||||||||| ||| || Sbjct 31886 AAAGATTTGCATCTTGACT 31868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072253232852