Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq602 214 2e-50 >seq602 Length=19998 Score = 214 bits (236), Expect = 2e-50 Identities = 594/897 (66%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| | |||| | |||||||| ||||| |||| ||| || || || Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAA-CCTAGTTCTAATA 14030 ||||| |||||||| || ||| | ||||| | ||| ||| | |||| || ||| | | Sbjct 6606 TCCATGAAATCAAACGGGTTT-TCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCA 6663 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 | | |||||| |||| ||| ||||| || |||||| |||||||||| |||| Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | | || || | || ||||| | ||| ||| || ||||| | |||| Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783 Query 14151 TAATCGTA-ATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 | | || ||||| | | | || | ||| || || | | || ||| ||| Sbjct 6784 TGG-CATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCA 6842 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || || ||| || ||||| |||||||| || || ||||| ||||| || | || ||| Sbjct 6843 AACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGC 6902 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 |||| || || ||||||| |||||| || || || || || |||||||||||||| ||| Sbjct 6903 ATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCC 6962 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTTCGATATCC 14387 |||||||| ||||| || | | || ||| | ||| | || | | || | |||| Sbjct 6963 TCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCC 7020 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA-- 14445 | || |||||||| | |||||||| ||| | || ||| || || || || Sbjct 7021 AGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACA 7080 Query 14446 ----TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | | |||| ||| | | | ||| ||||| ||||| || | | ||||| Sbjct 7081 ATTTTAGACGCTCCTGCTCAT-----CGCG-AATATATGTGTCAATCAGAAGGGAATACA 7134 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 | ||||| || || |||||||| || || || || ||||| | | ||| |||| Sbjct 7135 TCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGA 7194 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| ||||| ||| | | | ||||||||||| || || ||||| |||| Sbjct 7195 TTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTG 7254 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAA---GTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 ||||||| ||||| | || ||||| | || | | ||||| | ||| || Sbjct 7255 CAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATT-CAGAG--ACGCCC 7311 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 ||| || || |||||| || || || || || || || ||||| || |||||| | | Sbjct 7312 AATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACT 7371 Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAG 14795 ||||||| | | ||| ||||| | |||| || ||||||| || ||||| |||| Sbjct 7372 TTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAG 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482341910056160