Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq602 214 2e-50
>seq602
Length=19998
Score = 214 bits (236), Expect = 2e-50
Identities = 594/897 (66%), Gaps = 28/897 (3%)
Strand=Plus/Plus
Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972
||||||||||| | |||| | |||||||| ||||| |||| ||| || || ||
Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605
Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAA-CCTAGTTCTAATA 14030
||||| |||||||| || ||| | ||||| | ||| ||| | |||| || ||| | |
Sbjct 6606 TCCATGAAATCAAACGGGTTT-TCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCA 6663
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
| | |||||| |||| ||| ||||| || |||||| |||||||||| ||||
Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
| | || || | || ||||| | ||| ||| || ||||| | ||||
Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783
Query 14151 TAATCGTA-ATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209
| | || ||||| | | | || | ||| || || | | || ||| |||
Sbjct 6784 TGG-CATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCA 6842
Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269
|| || ||| || ||||| |||||||| || || ||||| ||||| || | || |||
Sbjct 6843 AACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGC 6902
Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329
|||| || || ||||||| |||||| || || || || || |||||||||||||| |||
Sbjct 6903 ATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCC 6962
Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTTCGATATCC 14387
|||||||| ||||| || | | || ||| | ||| | || | | || | ||||
Sbjct 6963 TCAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCC 7020
Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA-- 14445
| || |||||||| | |||||||| ||| | || ||| || || || ||
Sbjct 7021 AGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACA 7080
Query 14446 ----TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501
|| | | |||| ||| | | | ||| ||||| ||||| || | | |||||
Sbjct 7081 ATTTTAGACGCTCCTGCTCAT-----CGCG-AATATATGTGTCAATCAGAAGGGAATACA 7134
Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561
| ||||| || || |||||||| || || || || ||||| | | ||| ||||
Sbjct 7135 TCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGA 7194
Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621
||| ||||| ||| | | | ||||||||||| || || ||||| ||||
Sbjct 7195 TTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTG 7254
Query 14622 CAAAAAATGCCAATATGTTTTTAATAAA---GTATTGCTCTTCATTGCTGAGTTTTTTCC 14678
||||||| ||||| | || ||||| | || | | ||||| | ||| ||
Sbjct 7255 CAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATT-CAGAG--ACGCCC 7311
Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738
||| || || |||||| || || || || || || || ||||| || |||||| | |
Sbjct 7312 AATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACT 7371
Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAG 14795
||||||| | | ||| ||||| | |||| || ||||||| || ||||| ||||
Sbjct 7372 TTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAG 7428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482341910056160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |