Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq113 244 9e-60 seq602 221 1e-52 seq49 114 1e-20 seq612 91.5 1e-13 >seq113 Length=5777 Score = 244 bits (270), Expect = 9e-60 Identities = 1189/1870 (64%), Gaps = 47/1870 (3%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || ||||| | ||||| | || || || || || || |||||||||||||| ||| Sbjct 3326 TCGACGGTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTC 3385 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCC-AT--AA--CTCG 22223 || || ||| | ||||||| ||||||||| || || || | || || || |||| Sbjct 3386 TTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCG 3445 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 |||| ||| | ||||| ||||| || || |||||||| || ||||| || ||| Sbjct 3446 GCAA-----TGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGG 3500 Query 22284 CCATATTTATCAATG-TACGCATC---GACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339 |||||| ||||| | | | | | |||||||| |||||| | || || ||||| Sbjct 3501 CCATAT----CAATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTT 3556 Query 22340 ATCTCTAACGGTATCGATTCG---ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAA 22396 || ||| || ||| ||| || || | || || || || |||||| Sbjct 3557 ATGTCTTCAGGAATC---TCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTG 3613 Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 || || | | | ||||||||| | ||||||| || | |||| | || Sbjct 3614 GTTCGCATAGACGCATCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTG 3673 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 | | |||||| |||||||| || || || | | || || || || ||| | | || Sbjct 3674 AGAATTTGAAATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCA 3733 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || |||| ||| || | ||| || | ||||| || || |||||||| || | || Sbjct 3734 AAGCATTCGTTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGC 3793 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA---GCATCGACCAGTCCCAC 22633 | ||||| || | ||| | ||| | || || | | || | ||| ||| ||||| Sbjct 3794 AAGGAGTTCCTAACGCCATACTTGGCAACCTT-CGCACGAAGGGAATC--CCAATCCCAT 3850 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 | | || ||| ||||| |||||| ||| |||| || | ||| || ||| Sbjct 3851 AAAGATGATGGCACAACATT---CCACATGTCGAATTGAAAGATGCCCTGAGAAATGGGG 3907 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 || || | ||| | ||||| | |||| | | || || || || | ||| | Sbjct 3908 CTTCCCTGGTAAGACTCGTATGTACCAGTTTGCTGAGCCAGCTCACACGACTGCTCAAGA 3967 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCGGCGACGCTTTC 22812 || | | ||||| ||||| || || || |||||||||| ||| || | ||| || Sbjct 3968 GCAGCATGGTATATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGG-GCTGTC 4026 Query 22813 GTACGGCATAC-GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | ||||| ||||| | | ||||| || || | ||| || ||||| || || |||| Sbjct 4027 AAAAGGCATTTTGCATCGTAA-GAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCG 4085 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 ||| | | ||| ||| || | ||||| | |||||| | || |||||| Sbjct 4086 GTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAA 4145 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | | || | ||| | || || | ||| | | ||||| || || Sbjct 4146 TATTATTAAGATTTTTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAG 4205 Query 22992 CGCC--CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 || || || | | |||| | | || || || || || || || |||| || Sbjct 4206 ACCCGTCGCTTTTG--ATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAAC 4263 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109 ||| ||||| || | ||||| | ||||| ||||| | || | || || || || Sbjct 4264 CTCATCTTTTGATGAGTACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCC 4323 Query 23110 CAAATTGCTCTGGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168 || || | || || | ||| || ||||| ||||| || |||||||||| ||||| | Sbjct 4324 CAGGTTTTTTTGATTAGACTTTGCG-TTGCAAGAATCTTTAAAGAGCATGTATGGCGTTC 4382 Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228 | || || || |||| || | || || ||| | | || || | | ||| | Sbjct 4383 CGGTTTCCACTTGCGCATCAAGAATGGCATACCAGAGCTTTTGGGCAGGGAT-CGTTTTA 4441 Query 23229 CGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 || | | |||| |||| || || ||| | ||||| || | || ||||| Sbjct 4442 CGACCAAGACCTTTGGCCTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCAACAG 4501 Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347 |||| || || || | | | ||||| | ||| ||||||| || | || || Sbjct 4502 TCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACT 4561 Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407 ||| |||| || ||||| ||||||||||| || || || || || | | || |||| Sbjct 4562 CGTTTCATGAACAGATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCG 4621 Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467 ||||| || || || || |||||||| || || || || || || ||||| ||||| Sbjct 4622 TCTTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCC 4681 Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527 | |||| ||||| ||||| |||| ||||| ||||| |||||||| || || || || Sbjct 4682 AAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTC 4741 Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587 |||| || || | ||||| || || | |||||| || ||| ||| || || | | Sbjct 4742 ATGTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATA 4801 Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 || || |||| | || || | || | ||| | || ||| | || || Sbjct 4802 TAAGACCCAGAGGCTCTTATATTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTA 4861 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 |||| || ||| |||||| ||||| || || || ||| || || | | || Sbjct 4862 ATCAATGCACATGTTTTCAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCA 4921 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | ||| ||||| || || | || | || ||| |||| || || || ||| | Sbjct 4922 ATCAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAG 4981 Query 23768 GCGTGCGTAAAGTATCC-ATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826 || || || || |||| | ||||| | ||| ||||| |||||||| | || | ||| Sbjct 4982 GCATGGGTGAA-CATCCGCTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTC 5040 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 || ||||| || || | || || | ||| |||| || || || | ||| || Sbjct 5041 TTCACCGTGAATGCCAAGCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTT 5100 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 ||| | ||| | | |||||| ||||| | | ||||||||||||||||| | ||||| Sbjct 5101 GCCCCTGATTCTCAGCAGATACGAACGCTCAAGGGTTTTAAATCCAAAATACTGATAGTC 5160 Query 23947 AAAGTCACGA 23956 || || ||| Sbjct 5161 GAAATCTCGA 5170 >seq602 Length=19998 Score = 221 bits (244), Expect = 1e-52 Identities = 612/929 (66%), Gaps = 16/929 (2%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||| | ||| ||| ||||| ||||| || || ||||| || ||||| Sbjct 7453 GAGGAACCTTTGTTGAGAGATAATCCTTCCAGATTCGTGATTTTTCCAATCAAATATGAG 7394 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | || |||||| | | || || || ||||| |||||||| || ||| Sbjct 7393 GAAATCTGGCTTTTTTATAAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGAC 7334 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||| |||||||| | | |||||| || || || || || | ||||||| Sbjct 7333 CTGTCAAAGGATCTAACCCATTGGGCGTCTCTGAATGACGGGGAACGCCATTTTATCTCT 7274 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| ||||| || || |||||||| ||||| || || ||||| || | | Sbjct 7273 CACGTTTTGGCCTTTTTTGCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGC 7214 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| | || |||||| | | ||||| | | ||||||||| || ||| | || Sbjct 7213 TTTGCTAGGGAGGTGCAAATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATG 7154 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 ||||| | ||||| || |||||||| || || || || || || | || | | Sbjct 7153 GAAAATATCCATTCTGAGATGTATTCCCTTCTGATTGACACATATATTCGCGATGAGCAG 7094 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 ||| | | | |||||||||| |||||| || || || | || || || | Sbjct 7093 GAGCGTCTAAAATTGTTCAACGCCATCGAATATATCCCTAGCATTGAAAAAAAAGCCAAA 7034 Query 57927 TGGTCAATCAAATGGATAA-AAAGCGCCACGGCCACGTT-CGCCGAGAGGCTAATCGCGT 57984 ||| | | || ||||| ||| | | | || | || ||| |||| || | || | Sbjct 7033 TGGGCTTTGAACTGGATTGCAAATCCAGATGCCCCCTTTTCGCAGAGA--CTGGTTGCAT 6976 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | ||||| || || || ||||||||||| || ||||| || || |||||||| || | Sbjct 6975 TTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAA 6916 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | ||||| |||||||| || || || ||| ||||||| |||| | |||||||||| Sbjct 6915 AGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTC 6856 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC----GACGCGG 58160 | ||||| || ||||| || ||| | | || ||| | || || || || ||| Sbjct 6855 TACATACCGAGTTTGCTTGTCTATTACATTCCCAC---CTGAAAAAGCCGGCAGATCCGG 6799 Query 58161 -GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 ||| || | | ||||||| ||||| || || ||| | ||| | || Sbjct 6798 CGAT--TATATATGCCATTATCGATGAGGCCGTTAGTATTGAACAGTCTTTTTTGGTTGA 6741 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 | || ||||| | | | | |||||||| || ||| |||| || || Sbjct 6740 TTCTCTGCCGGTCGACCTAATTGGTATGAATTCCACCTTAATGAAGCAGTATATCTGCTT 6681 Query 58280 TGTTGCCGACAGACTTTTGCTCGAAC-TGATTGGAGAGCGTCATTACAACACGAAAAATC 58338 |||||||| |||||| ||||| || || || | | | || || |||| | Sbjct 6680 CGTTGCCGATAGACTTCTGCTCTCACTTGGTTTGTCA-AAACTGTATAATGTCGAAAACC 6622 Query 58339 CGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaG 58398 |||||||||| ||| || | || || | || || | |||||||| ||||| |||| Sbjct 6621 CGTTTGATTTCATGGATTTAATTTCCATGTCAGGAAAAAGCAACTTTTTTGAAAAGAAAG 6562 Query 58399 TTAGCGAATATCAAAAATACGGCGTGATG 58427 || ||||||||||||| | ||||||||| Sbjct 6561 TTGGCGAATATCAAAAGTCTGGCGTGATG 6533 >seq49 Length=10291 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || || ||||| ||||| | || |||||| | || Sbjct 10178 CATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTC 10119 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || || | ||| ||||| ||||| | ||||| ||||| Sbjct 10118 AGACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCA 10059 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || ||||| ||||| || ||| |||| || | || | || ||||| Sbjct 10058 GCAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAA 9999 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || || ||||| || || |||||| | || || Sbjct 9998 TATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGG 9951 >seq612 Length=74583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || ||||| || || || |||| || || | || Sbjct 29548 ATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTCG 29607 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || |||| ||| ||||||||||| | || || |||||| Sbjct 29608 GACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 29667 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||||||| | || || | || | |||||||| Sbjct 29668 CAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAAT 29727 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || || ||||| || ||| Sbjct 29728 ATTCAGAAGGAGTCCACGCTCCATCTTGTGCTT 29760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762989887040