Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq113 244 9e-60
seq602 221 1e-52
seq49 114 1e-20
seq612 91.5 1e-13
>seq113
Length=5777
Score = 244 bits (270), Expect = 9e-60
Identities = 1189/1870 (64%), Gaps = 47/1870 (3%)
Strand=Plus/Plus
Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168
|| || ||||| | ||||| | || || || || || || |||||||||||||| |||
Sbjct 3326 TCGACGGTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTC 3385
Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCC-AT--AA--CTCG 22223
|| || ||| | ||||||| ||||||||| || || || | || || || ||||
Sbjct 3386 TTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCG 3445
Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283
|||| ||| | ||||| ||||| || || |||||||| || ||||| || |||
Sbjct 3446 GCAA-----TGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGG 3500
Query 22284 CCATATTTATCAATG-TACGCATC---GACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339
|||||| ||||| | | | | | |||||||| |||||| | || || |||||
Sbjct 3501 CCATAT----CAATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTT 3556
Query 22340 ATCTCTAACGGTATCGATTCG---ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAA 22396
|| ||| || ||| ||| || || | || || || || ||||||
Sbjct 3557 ATGTCTTCAGGAATC---TCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTG 3613
Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456
|| || | | | ||||||||| | ||||||| || | |||| | ||
Sbjct 3614 GTTCGCATAGACGCATCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTG 3673
Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516
| | |||||| |||||||| || || || | | || || || || ||| | | ||
Sbjct 3674 AGAATTTGAAATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCA 3733
Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
|| |||| ||| || | ||| || | ||||| || || |||||||| || | ||
Sbjct 3734 AAGCATTCGTTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGC 3793
Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA---GCATCGACCAGTCCCAC 22633
| ||||| || | ||| | ||| | || || | | || | ||| ||| |||||
Sbjct 3794 AAGGAGTTCCTAACGCCATACTTGGCAACCTT-CGCACGAAGGGAATC--CCAATCCCAT 3850
Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693
| | || ||| ||||| |||||| ||| |||| || | ||| || |||
Sbjct 3851 AAAGATGATGGCACAACATT---CCACATGTCGAATTGAAAGATGCCCTGAGAAATGGGG 3907
Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753
|| || | ||| | ||||| | |||| | | || || || || | ||| |
Sbjct 3908 CTTCCCTGGTAAGACTCGTATGTACCAGTTTGCTGAGCCAGCTCACACGACTGCTCAAGA 3967
Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCGGCGACGCTTTC 22812
|| | | ||||| ||||| || || || |||||||||| ||| || | ||| ||
Sbjct 3968 GCAGCATGGTATATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGG-GCTGTC 4026
Query 22813 GTACGGCATAC-GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871
| ||||| ||||| | | ||||| || || | ||| || ||||| || || ||||
Sbjct 4027 AAAAGGCATTTTGCATCGTAA-GAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCG 4085
Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931
||| | | ||| ||| || | ||||| | |||||| | || ||||||
Sbjct 4086 GTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAA 4145
Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991
| | || | ||| | || || | ||| | | ||||| || ||
Sbjct 4146 TATTATTAAGATTTTTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAG 4205
Query 22992 CGCC--CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049
|| || || | | |||| | | || || || || || || || |||| ||
Sbjct 4206 ACCCGTCGCTTTTG--ATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAAC 4263
Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109
||| ||||| || | ||||| | ||||| ||||| | || | || || || ||
Sbjct 4264 CTCATCTTTTGATGAGTACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCC 4323
Query 23110 CAAATTGCTCTGGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168
|| || | || || | ||| || ||||| ||||| || |||||||||| ||||| |
Sbjct 4324 CAGGTTTTTTTGATTAGACTTTGCG-TTGCAAGAATCTTTAAAGAGCATGTATGGCGTTC 4382
Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228
| || || || |||| || | || || ||| | | || || | | ||| |
Sbjct 4383 CGGTTTCCACTTGCGCATCAAGAATGGCATACCAGAGCTTTTGGGCAGGGAT-CGTTTTA 4441
Query 23229 CGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287
|| | | |||| |||| || || ||| | ||||| || | || |||||
Sbjct 4442 CGACCAAGACCTTTGGCCTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCAACAG 4501
Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347
|||| || || || | | | ||||| | ||| ||||||| || | || ||
Sbjct 4502 TCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACT 4561
Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407
||| |||| || ||||| ||||||||||| || || || || || | | || ||||
Sbjct 4562 CGTTTCATGAACAGATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCG 4621
Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467
||||| || || || || |||||||| || || || || || || ||||| |||||
Sbjct 4622 TCTTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCC 4681
Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527
| |||| ||||| ||||| |||| ||||| ||||| |||||||| || || || ||
Sbjct 4682 AAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTC 4741
Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587
|||| || || | ||||| || || | |||||| || ||| ||| || || | |
Sbjct 4742 ATGTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATA 4801
Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647
|| || |||| | || || | || | ||| | || ||| | || ||
Sbjct 4802 TAAGACCCAGAGGCTCTTATATTATGGATATGAAGACCAACACCCCCGGCAGACTTGCTA 4861
Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707
|||| || ||| |||||| ||||| || || || ||| || || | | ||
Sbjct 4862 ATCAATGCACATGTTTTCAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCA 4921
Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767
| ||| ||||| || || | || | || ||| |||| || || || ||| |
Sbjct 4922 ATCAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAG 4981
Query 23768 GCGTGCGTAAAGTATCC-ATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826
|| || || || |||| | ||||| | ||| ||||| |||||||| | || | |||
Sbjct 4982 GCATGGGTGAA-CATCCGCTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTC 5040
Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886
|| ||||| || || | || || | ||| |||| || || || | ||| ||
Sbjct 5041 TTCACCGTGAATGCCAAGCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTT 5100
Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946
||| | ||| | | |||||| ||||| | | ||||||||||||||||| | |||||
Sbjct 5101 GCCCCTGATTCTCAGCAGATACGAACGCTCAAGGGTTTTAAATCCAAAATACTGATAGTC 5160
Query 23947 AAAGTCACGA 23956
|| || |||
Sbjct 5161 GAAATCTCGA 5170
>seq602
Length=19998
Score = 221 bits (244), Expect = 1e-52
Identities = 612/929 (66%), Gaps = 16/929 (2%)
Strand=Plus/Minus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|| ||||| | ||| ||| ||||| ||||| || || ||||| || |||||
Sbjct 7453 GAGGAACCTTTGTTGAGAGATAATCCTTCCAGATTCGTGATTTTTCCAATCAAATATGAG 7394
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| || ||| | || |||||| | | || || || ||||| |||||||| || |||
Sbjct 7393 GAAATCTGGCTTTTTTATAAAAAGTCGGTTGCTTCCTTCTGGACGGTCGAAGAGGTGGAC 7334
Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
||||| |||||||| | | |||||| || || || || || | |||||||
Sbjct 7333 CTGTCAAAGGATCTAACCCATTGGGCGTCTCTGAATGACGGGGAACGCCATTTTATCTCT 7274
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| ||||| ||||| || || |||||||| ||||| || || ||||| || | |
Sbjct 7273 CACGTTTTGGCCTTTTTTGCAGCCTCCGATGGAATTGTAAATGAAAATTTAGTTGTTCGC 7214
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
||| | || |||||| | | ||||| | | ||||||||| || ||| | ||
Sbjct 7213 TTTGCTAGGGAGGTGCAAATCCCAGAGGCTCGTTTCTTTTACGGGTTCCAAATCATGATG 7154
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
||||| | ||||| || |||||||| || || || || || || | || | |
Sbjct 7153 GAAAATATCCATTCTGAGATGTATTCCCTTCTGATTGACACATATATTCGCGATGAGCAG 7094
Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926
||| | | | |||||||||| |||||| || || || | || || || |
Sbjct 7093 GAGCGTCTAAAATTGTTCAACGCCATCGAATATATCCCTAGCATTGAAAAAAAAGCCAAA 7034
Query 57927 TGGTCAATCAAATGGATAA-AAAGCGCCACGGCCACGTT-CGCCGAGAGGCTAATCGCGT 57984
||| | | || ||||| ||| | | | || | || ||| |||| || | || |
Sbjct 7033 TGGGCTTTGAACTGGATTGCAAATCCAGATGCCCCCTTTTCGCAGAGA--CTGGTTGCAT 6976
Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044
| ||||| || || || ||||||||||| || ||||| || || |||||||| || |
Sbjct 6975 TTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTCGTTTGCAGCCATCTTTTGGATAAAAA 6916
Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104
| ||||| |||||||| || || || ||| ||||||| |||| | ||||||||||
Sbjct 6915 AGCGCGGTCTGATGCCTGGGCTTACTTTTTCCAACGAGCTGATCAGTAGAGACGAGGGTC 6856
Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC----GACGCGG 58160
| ||||| || ||||| || ||| | | || ||| | || || || || |||
Sbjct 6855 TACATACCGAGTTTGCTTGTCTATTACATTCCCAC---CTGAAAAAGCCGGCAGATCCGG 6799
Query 58161 -GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219
||| || | | ||||||| ||||| || || ||| | ||| | ||
Sbjct 6798 CGAT--TATATATGCCATTATCGATGAGGCCGTTAGTATTGAACAGTCTTTTTTGGTTGA 6741
Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279
| || ||||| | | | | |||||||| || ||| |||| || ||
Sbjct 6740 TTCTCTGCCGGTCGACCTAATTGGTATGAATTCCACCTTAATGAAGCAGTATATCTGCTT 6681
Query 58280 TGTTGCCGACAGACTTTTGCTCGAAC-TGATTGGAGAGCGTCATTACAACACGAAAAATC 58338
|||||||| |||||| ||||| || || || | | | || || |||| |
Sbjct 6680 CGTTGCCGATAGACTTCTGCTCTCACTTGGTTTGTCA-AAACTGTATAATGTCGAAAACC 6622
Query 58339 CGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaG 58398
|||||||||| ||| || | || || | || || | |||||||| ||||| ||||
Sbjct 6621 CGTTTGATTTCATGGATTTAATTTCCATGTCAGGAAAAAGCAACTTTTTTGAAAAGAAAG 6562
Query 58399 TTAGCGAATATCAAAAATACGGCGTGATG 58427
|| ||||||||||||| | |||||||||
Sbjct 6561 TTGGCGAATATCAAAAGTCTGGCGTGATG 6533
>seq49
Length=10291
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| || || || || || ||||| ||||| | || |||||| | ||
Sbjct 10178 CATGCAAATCTTCGTCAAAACACTTACTGGGAAAACAATCACGCTAGAAGTTGAATCTTC 10119
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| || || || | ||| ||||| ||||| | ||||| |||||
Sbjct 10118 AGACACCATTGAAAATGTAAAGCAAAAAATCCAAGACAAAGAAGGAATACCGCCTGACCA 10059
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || || ||||| ||||| || ||| |||| || | || | || |||||
Sbjct 10058 GCAACGCCTTATATTTGCTGGAAAGCAGCTGGAGGATGGAAGAACGCTCTCTGACTATAA 9999
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||| || || || ||||| || || |||||| | || ||
Sbjct 9998 TATTCAAAAAGAGTCAACCCTCCATCTAGTGCTGAGACTGCGAGGAGG 9951
>seq612
Length=74583
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || || || ||||| || || || |||| || || | ||
Sbjct 29548 ATGCAAATTTTTGTCAAAACACTTACGGGCAAGACCATTACGCTCGAAGTGGAGTCTTCG 29607
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || |||| ||| ||||||||||| | || || ||||||
Sbjct 29608 GACACCATTGAGAATGTGAAGCAGAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 29667
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || || ||||||||| | || || | || | ||||||||
Sbjct 29668 CAGCGCCTGATTTTTGCAGGCAAACAGCTTGAGGATGGAAGAACACTCTCTGATTATAAT 29727
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||| || || || || || ||||| || |||
Sbjct 29728 ATTCAGAAGGAGTCCACGCTCCATCTTGTGCTT 29760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445762989887040
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