Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq602 203 4e-47 seq113 127 3e-24 >seq602 Length=19998 Score = 203 bits (224), Expect = 4e-47 Identities = 403/593 (68%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| || ||||||||||||||||| || | ||||| ||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || |||||||| | |||||| |||| || || || ||||||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT- 33758 || || || ||||| ||||| |||| ||||||| | | ||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 33759 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| || |||||| | ||| || |||| | | ||| || ||| ||||| | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 33817 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTA 33872 | | | | |||| | | || ||| || ||| || || |||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || ||||| || ||||| || || || || ||||| || | | |||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | || ||||| || || ||| || | ||||||||||||| || |||||||| | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 34052 ||||||||||| ||||| || || ||||||| ||| | | || | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 |||| | | ||| || || | ||||| ||||| || ||||| || || || | | | Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 |||||||| | | |||||| || | ||||| |||||| ||||| || ||||| Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 127 bits (140), Expect = 3e-24 Identities = 744/1182 (63%), Gaps = 17/1182 (1%) Strand=Plus/Plus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || || || ||||| ||||| | || | ||| | ||| ||||| ||||| || Sbjct 3977 TATATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATT 4036 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 || | | | |||| || || | ||||| || ||||| || || |||||||||||| Sbjct 4037 TTGCATCGTAAGAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTC 4096 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 |||| || ||| || | |||||| | || | ||| ||||| ||||| ||| Sbjct 4097 ATATTTGATCGCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGA 4156 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62927 ||| | | |||||| | |||| | || | ||||||||| ||| || || Sbjct 4157 TTTTTTGTTACCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTT 4216 Query 62928 ---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCAT 62982 | |||||| | ||||| || || || ||||| |||| ||||||| | || Sbjct 4217 TTGATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGAT 4276 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 | || || || || || || || | || | ||||| || || | |||| || Sbjct 4277 GAG--TACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTT 4334 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 ||||| |||| ||| || | ||| ||| | || ||| |||| || || ||||| | | Sbjct 4335 GATTAGACTTTGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTT 4394 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT---CC 63159 | | || | ||| || | ||||| | | || || | || | | || Sbjct 4395 GCGCATCAAGAATGGCATACCAGAGCTTTTGGGCAGGGATCGTT--TTACGACCAAGACC 4452 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||| | | | ||| || ||| || ||| ||||| ||||||| | | ||| | Sbjct 4453 TTTGGCCT-CATATGAAGCATATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAAC 4511 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||| |||| ||||| | | | |||| || || | || |||||||||||| | Sbjct 4512 CTGGAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGA 4571 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | ||||| || ||||| || || ||| ||||| || | | || || ||||| Sbjct 4572 ACAGATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAA 4631 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||| || || | ||| | ||| | | || ||||| ||||| || ||||| || || | Sbjct 4632 AATTTTTCTTTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTG 4691 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | ||||| ||||| || || || ||||| | |||| || || | ||||| | Sbjct 4692 CAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGA 4751 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | ||||||||||| ||| || || | ||||| ||| Sbjct 4752 CACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAATATAAGACCCAG 4811 Query 63520 TGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 ||| | |||||| || ||| ||||| | ||||| || || || ||||| Sbjct 4812 AGGCTCTTATATTATGGATATGA-AGACCAACACCCCCGGCAGACTTGCTAATCAATGCA 4870 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 ||| ||| | |||||||| || || || ||| || |||| || | |||| Sbjct 4871 CATGTTTTCAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAA 4930 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 ||| || | ||| | || | || || |||||||| | ||| || || || || || Sbjct 4931 CAGGATGAAAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTG 4990 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63757 ||| | ||| | | ||| ||||| || || || ||||| | || || | || Sbjct 4991 AACATCCGCTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCG-TG 5049 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||| || | || || | ||| | || | ||| || | || |||| ||| | || Sbjct 5050 AATGCCAAGCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTTGCCCCTGAT 5109 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 | ||| || || || || | |||||||| |||||||| Sbjct 5110 TCTCAGCAGATACGAACGCTCAAGGGTTTTAAATCCAAAATA 5151 Score = 102 bits (112), Expect = 1e-16 Identities = 169/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 62162 || |||| ||||||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 62163 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62222 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 62223 ATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62282 ||||| ||||||||| ||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 62283 A 62283 | Sbjct 3569 A 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812781895360