Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq602 154 1e-32 seq113 98.7 9e-16 >seq602 Length=19998 Score = 154 bits (170), Expect = 1e-32 Identities = 568/886 (64%), Gaps = 9/886 (1%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||||||| | |||| ||| ||||| || | || ||| | || || | Sbjct 6545 CTTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAA 6604 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| || ||| || || | ||||| | | |||| |||| | || | | | Sbjct 6605 ATCCATGAAATCAAACGGGTTTTCGACATTATACAGTTTTG-ACAAACCAAGTGAGAGCA 6663 Query 11458 TAA-TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 || |||||| || ||||| |||||||| |||||| |||||||||| || | Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | || ||||| | || | | |||||| || ||| ||| |||| || ||| ||| | Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | | ||||| || | || || | | | || | | || ||| |||| Sbjct 6784 TGGCATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCAA 6843 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 | || ||||| ||| ||||||||||| || || || || ||||| || | || |||| Sbjct 6844 ACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCA 6903 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 ||| || || |||||||||||||| || || ||||| || || ||||||||||| |||| Sbjct 6904 TCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCT 6963 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-----ATCCA 11811 | || || |||||||| || | || ||| | | | | || ||| ||||| Sbjct 6964 CAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 || ||||| | ||||| |||| | || || ||| || ||||| || || Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 | | || | ||| | | |||||| || || | | |||||| || || Sbjct 7082 TTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAATACATCTCAGA 7141 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||| ||||||||||| ||||| || || || || | || ||||||| || || Sbjct 7142 ATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGATTTGCAC 7201 Query 11992 ATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 ||| | ||| | | ||||||| ||||||||||| ||||| | ||||||||| Sbjct 7202 CTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGCAAAAAA 7261 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAA 12111 || | | || ||||| | ||| | | | | | |||||| || Sbjct 7262 GGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATGGGTTAG 7321 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 ||| ||||| | || || ||||| || ||||| || || || || | |||||| | Sbjct 7322 ATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTTATAAAA 7381 Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTAGAA 12217 |||||| || | ||| || || || ||||| ||||| || ||| Sbjct 7382 AAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAA 7427 >seq113 Length=5777 Score = 98.7 bits (108), Expect = 9e-16 Identities = 961/1527 (63%), Gaps = 60/1527 (4%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || ||||| || | | | ||| | ||||||| || ||||||||| || || Sbjct 3326 TCGACGGTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTC 3385 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||||||| | |||| ||||||||||||| || || || | | | ||| | Sbjct 3386 TTTAGCCCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAAGGCTCG 3445 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 | || | |||||| | || || ||||| || ||||| || |||| ||| | |||| Sbjct 3446 GCAATGTGAATATTGAGA--GACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCA 3503 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | || | ||||| | || ||||| || || |||| | || |||| | | Sbjct 3504 TATCAATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTT 3563 Query 37028 CTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 | || | || || || ||| || ||||| | | |||| || || | Sbjct 3564 CAGGAATCTCGGGTATATTCGCAATTGAGCCATTGTTTG---CAATG--ATCCTGGTTCG 3618 Query 37085 CATT-----ATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 ||| || ||||| | | | |||| | || | || || | | |||| | || Sbjct 3619 CATAGACGCATCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTGAGAAT 3678 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 ||||| || || ||||| |||| ||||||||||||||| || || | |||| | | Sbjct 3679 TTGAAATTCGCCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCA 3738 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 || || | ||||||||| ||||| || || || ||||| || |||| || | | Sbjct 3739 TTCGTTGAACCCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGA 3798 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 || || | |||| | || || || || ||||||||||||| || Sbjct 3799 GTTCCTAACGCCATACTTGGCAACCTTCGCACGAAGGGAATCCCAATCCCATAAAGATGA 3858 Query 37320 TGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||| | || |||||| || |||| | || || | | ||| | || | Sbjct 3859 TGGCACAACATT--CCACATGTCGAATTGAAAGATGCCCTGAGAAA-TGGGGCTTCCCTG 3915 Query 37378 -TATGTCTCATAAGGTCCGTAAATT--TTAGCTAGTTCGCA--ACTAGATTCTAGTGCGG 37432 || | ||| || | || | || | ||| || || || ||| || || || | Sbjct 3916 GTAAGACTCGTATGTACC--AGTTTGCTGAGCCAGCTCACACGACTGC--TCAAGAGCAG 3971 Query 37433 CATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG 37492 ||| |||||||| || || || | ||| || ||| | ||| ||| || || | Sbjct 3972 CATGGTATATTGTCTCAAATATCTTTATGTTCAATTCTCGCGCTGGAGGGCTGTCAAAAG 4031 Query 37493 -CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTA 37551 ||| || | || ||| ||| || | ||| || || || || || || |||||| Sbjct 4032 GCATTTTGCA-TCGTAAGAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTA 4090 Query 37552 TGTTTCTTATTAGATCTAGACGATTCTA-TC-ACTGGATAATAATTGATATCTATTATTT 37609 ||| || |||| |||| | | | || || || ||||| | |||| ||| || || | Sbjct 4091 TGTCTCATATTTGATC--GCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATAT 4148 Query 37610 TATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAACTTGTCGAA--CATAA-AT 37665 |||| |||||||| || | ||| | || || | | | | | || || || || | Sbjct 4149 TATTAAGATTTTTTGTTACCACTTTGGCAACATAATGT-AGCATATCAAAATCAAAAGAC 4207 Query 37666 ACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCA 37725 ||| | || | ||| | | | ||| || | || ||||| || | ||| ||| Sbjct 4208 CCGTCGCTTTTGATAAACATCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCA 4267 Query 37726 TCTTCGTTACTAAAT--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCA 37783 |||| || | | | || || || |||||||| | || | | || || |||| Sbjct 4268 TCTT--TTGATGAGTACTGGATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCA 4325 Query 37784 AATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTT 37843 || ||||||| || ||| || |||||||||||| | || || || |||||||| Sbjct 4326 GGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGG 4385 Query 37844 GTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA- 37902 ||| | ||| || || | ||| | | ||| | || || | ||||| |||| Sbjct 4386 TTTCCACTTGCGCATCAAGAATGGCATACCAGAGCTTTTGGGC---AGGGATCGTTTTAC 4442 Query 37903 -AtttttttCTTTGTT-TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA- 37959 | ||||| || ||| |||||| | | ||| || ||||| ||| Sbjct 4443 GACCAAGACCTTTGGCCTCATATGAAGCATATAACTCTTCAAACTCCGGTCCCCA-ACAG 4501 Query 37960 TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACG 38019 ||| | || |||||| || |||||| | |||| ||| |||||| || || Sbjct 4502 TCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACT 4561 Query 38020 CGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCT 38079 |||| ||| || | ||| |||| ||||| ||| ||| | ||| || | | || Sbjct 4562 CGTTTCATGAACAGATCGGGTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCG 4621 Query 38080 TCGTTCCCTACATTCTTTCTT--AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 || || || | ||| |||||| || | ||||| ||||| | |||||||||||| || | Sbjct 4622 TCTTTTCCAAAATT-TTTCTTTAAATCCAAGAAA-TCGAAAACATCAGCGTGCCAGGGCT 4679 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | |||||| | | || || |||| ||||| || || |||| | ||||| | | Sbjct 4680 CCAAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAG 4739 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATA 38257 | | ||||| | | | ||| || |||||||| || || | ||| | | || | | Sbjct 4740 TCATGTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCCACCTGTTCCAGCAA 4799 Query 38258 TATAAGTACCCTTA-GCTCGTATATTA 38283 |||||| |||| | |||| ||||||| Sbjct 4800 TATAAG-ACCCAGAGGCTCTTATATTA 4825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521215785280