Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq602 206 4e-48 seq113 107 3e-18 >seq602 Length=19998 Score = 206 bits (228), Expect = 4e-48 Identities = 404/593 (68%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| |||||||||||||||||||| || | ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || || |||||||| | |||||| |||| ||||| || || |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT- 36334 || || || ||||| ||||| |||| ||||||| | | |||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 36335 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| || |||||| | ||| || |||| | | ||| || || || || | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 36393 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATATGTATCAATCAAAAGACTA 36448 | | | | |||| | | || ||| || |||||| ||||||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || ||||| || ||||| || ||||| || ||||| || | | |||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | || || || || || ||| || | ||||||||||||| || ||||| || | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||||||||| ||||| || || ||||||| ||| | || | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 |||| | | ||| || || | ||||| ||||| || ||||| || || || | | | Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 |||||||| | | |||||| || | ||||| ||||||||||| || ||||| Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 107 bits (118), Expect = 3e-18 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 64955 || |||| ||||||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 64956 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 65015 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 65016 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 65075 ||||| ||||||||||||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 65076 A 65076 | Sbjct 3569 A 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167764978080