Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq602 224 1e-53 seq113 156 6e-33 >seq602 Length=19998 Score = 224 bits (248), Expect = 1e-53 Identities = 408/593 (69%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| || ||||||||||||||||| || || ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || |||||||| | |||||| |||| ||||| ||||| |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGT- 50136 || || || ||||||||||| ||||| ||||||| | | ||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 50137 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| || |||||| | ||| || |||| | | ||| || ||| ||||| | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 50195 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTA 50250 | | | | |||| | | || ||| || ||| || || |||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || ||||| || ||||| || || || || ||||| || | | |||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || ||||| || || ||| || || ||||||||||||| || ||||| || | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||||||||| ||||| || || |||||||| ||| | | || | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCC 7310 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||| | | ||| || || | || || ||||| || ||||| || || || | | | Sbjct 7311 CAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGAC 7370 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 |||||||| | | |||||| || | ||||| |||||| ||||| || ||||| Sbjct 7371 TTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 156 bits (172), Expect = 6e-33 Identities = 1146/1834 (62%), Gaps = 34/1834 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 || |||| ||||| | | ||| || || || || ||||| ||||| || || ||||| Sbjct 3332 GTAAATTTAATGGCTTCAGCTGCAGGCTTTGTTCGCAGATAATACATGCCGGTCTTTAGC 3391 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-AT--AACTCGGATCTGCT 78834 || |||| ||| ||||||||| || || || || || || || || || Sbjct 3392 CCCTTTTTCCACGAGTAAAAATGCATAGAAGTGAGCTTCGAGATGGAA---GGCTCGGCA 3448 Query 78835 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 78894 || || ||||| | ||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 3449 ATGTGAATATTGAGAGACTGGCTTTGGTCGATAAAGGCGCCTCGGTCCACGGCCATATCA 3508 Query 78895 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 78954 ||||| ||||||||||||||||||| | || |||||| || | || ||||| ||| Sbjct 3509 ATGATGCTCTTTTGTGGAATTTCCCACACGGTCCTATAAAGGTGCCTTATGTCTTCAGGA 3568 Query 78955 AGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | | | ||||| ||| || ||| | ||| || ||||| | || || Sbjct 3569 ATCTCGGGTATATTCGCAATTGAGCCATTGTTTGCAATGATCCTGGTTCGCATAGACGCA 3628 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | ||| || | | | ||| | ||| ||||| |||| | | ||||||||| Sbjct 3629 TCCCACAAACCTAGATTTATCAAATCCTTAAAGAGATATTGATTGAGAATTTGAAATTCG 3688 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 || || || |||| | || || ||||| || || | || | |||| || Sbjct 3689 CCGGATAACACTCGTCTTGTATATATATTTGACGTGTAGGCCTCAAAGCATTCGTTGAAC 3748 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || || ||||| | || || ||||| ||||| || || | | || || |||| Sbjct 3749 CCTAATATTTGGGATGTCGAGGCCGTGGGCATCGGAGCTAGGAGCAAGGAGTTCCTAACG 3808 Query 79192 CCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA--AAGATCAGACGGGACAA 79249 || || | || | || || ||||||||||| ||||| || || |||| Sbjct 3809 CCATACTTGGCAACCTTCGCACGAAGGGAATCCCAATCCCATAAAGAT--GATGGCACAA 3866 Query 79250 CATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCAT 79309 ||||||| | || |||| | || || | | | | ||| ||| | || | Sbjct 3867 CATTCCACATGTCGAATTGAAAGATGCCCTGAGAAATGGGGCTTCCCTGGTAAGACTCGT 3926 Query 79310 AAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 | | || | | || | ||||| | ||| | || | | || || || | Sbjct 3927 ATGTACCAGTTTGCTGAGCCAGCTCACACGACTGCTCAAGAGCAGCATGGTATATTGTCT 3986 Query 79370 CGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429 | || ||||| | || | ||| | ||| |||| ||||| || || | | | Sbjct 3987 CAAATATCTTTATGTTCAATTCTCGCGCTGGAGGGCTGTCAAAAGGCATTTTGCATCGTA 4046 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 |||| ||||| | ||||| || ||||| || || |||||||||||| |||| || Sbjct 4047 AGAACGTATCTGCAAGACCTTGGACGCCAATTCCAATCGGTCTATGTCTCATATTTGATC 4106 Query 79490 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTA 79549 ||| || | |||||| | || | ||| ||||| ||||| ||||| | || Sbjct 4107 GCCTAGCCTCCTCGACAGGATAGAAGTTGACATCGATAATATTATTAAGATTTTTTGTTA 4166 Query 79550 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT---ACAAACA 79606 |||||| | |||| | ||| | ||||||||| || || || | ||||| Sbjct 4167 CCACTTTGGCAACATAATGTAGCATATCAAAATCAAAAGACCCGTCGCTTTTGATAAACA 4226 Query 79607 TGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTG 79664 | | || | || || || |||||||||| ||||||| | || | || || Sbjct 4227 TCGGAAGTGCAATGGAAGCGAGGTTACAAACGGAAACCTCATCTTTTGATGAG--TACTG 4284 Query 79665 TATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724 || ||||| || || | ||| | || ||||| || | |||| ||||||| ||| Sbjct 4285 GATGATTTCTGTACACAAGTTTGAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTT 4344 Query 79725 TTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTAT 79784 | ||| || | ||| ||| | || ||| | || || || ||||| | || | || | Sbjct 4345 TGCGTTGCAAGAATCTTTAAAGAGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAG 4404 Query 79785 AATCGCTTTCCAGACGACTCGAGCCTTTAT---TATA-GACTTGTATCTCTTTTCTCTTT 79840 ||| || | ||||| | | || || | || ||| | || | ||| | Sbjct 4405 AATGGCATACCAGAGCTTTTGGGCAGGGATCGTTTTACGACCAAGACCTTTGGCCTCATA 4464 Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900 | | | |||||| ||| ||||| ||||||| ||| || || ||| | Sbjct 4465 TGAA----GCATATAACTCTTCAAACTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGT 4520 Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAG 79960 | | ||||| | | | |||| ||||| | || ||||||||||| || ||||| | Sbjct 4521 CATTTGGACAGAAAAGAGTCCACATCCCATCTTGCTCCACTCGTTTCATGAACAGATCGG 4580 Query 79961 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 80020 | ||||| || || ||| ||||| ||| | | ||| || ||||| ||| || | Sbjct 4581 GTATCCATAGGGCATAAAAAAGATCCCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCT 4640 Query 80021 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 80080 | | ||| | ||| | | || ||||| ||||| || ||||| || || || | | | Sbjct 4641 TTAAATCCAAGAAATCGAAAACATCAGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGC 4700 Query 80081 CCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 80140 | |||||||| || || || ||||| | |||| || || | ||||| || | | || Sbjct 4701 CAGGTCGTTTATTCCCGCCTTGATCGACATATCGTGCAGTCATGTTATAGACACGAAGCA 4760 Query 80141 TTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 | || | ||||| || || ||| ||| || || | ||||| ||| ||| | Sbjct 4761 TGGGGACTATACCGTTTGA-GTAGCCACCTGTTCCAGCAATATAAGACCCAGAGGCTCTT 4819 Query 80200 ATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 |||||| || ||| ||||| | ||||| || || || ||||| ||| ||| Sbjct 4820 ATATTATGGATATGA-AGACCAACACCCCCGGCAGACTTGCTAATCAATGCACATGTTTT 4878 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 | || ||||| || || || ||| ||| |||| || | ||||||| || Sbjct 4879 CAGGGTGTCATATATTCCGGTGATCGAATCGTCAGTCATTGCAATCAAAAAACAGGATGA 4938 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 | ||| | || || || |||||||| | ||| || || || || || ||| Sbjct 4939 AAGCTGGGGCCGCGGTGTACCGGCATTAAAAAGGGTTGGGGAGGCATGGGTGAACATCCG 4998 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTA 80437 | ||||| | ||| ||||| || || || || || | || || | ||||| || | Sbjct 4999 CTGAGACATCAAATTATACGTTTCGATGGCAGAGTCGACGTCTTCACCG-TGAATGCCAA 5057 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497 ||| || | ||| | || | ||| || | || || | |||| | ||| ||| || Sbjct 5058 GCGCAACTCTCATGATCAGATACTGGGGACGCTCCACAACCTTGCCCCTGATTCTCAGCA 5117 Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 || || || | |||||||| |||||||| Sbjct 5118 GATACGAACGCTCAAGGGTTTTAAATCCAAAATA 5151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263305243680