Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq602 214 2e-50 >seq602 Length=19998 Score = 214 bits (236), Expect = 2e-50 Identities = 588/893 (66%), Gaps = 20/893 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | |||| | |||||||| ||||| |||| ||| || || || Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAA-CCTAGTTCTAATA 13698 ||||| |||||||| || ||| | ||||| | ||| ||| | |||| || ||| | | Sbjct 6606 TCCATGAAATCAAACGGGTTT-TCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCA 6663 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | | |||||| |||| || ||||| || |||||| |||||||||| |||| Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | | || || | || ||||| | ||| ||| || ||||| | |||| Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | |||||| | | | || | ||| || || | | || ||| |||| Sbjct 6784 TGGCATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCAA 6843 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || ||| || ||||| |||||||| || || ||||| ||||| || | || |||| Sbjct 6844 ACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCA 6903 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| || || ||||||| |||||| || || ||||| ||||||||||||||||| |||| Sbjct 6904 TCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCT 6963 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTTCGATATCCA 14056 ||||||| ||||| || | | || ||| | ||| | || | | || | ||||| Sbjct 6964 CAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 || |||||||| | |||||||| ||| | || ||| || || || || || Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081 Query 14117 ATAT------TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 | | |||| ||| | | | ||| ||||| ||||| || | | |||||| Sbjct 7082 TTTTAGACGCTCCTGCTCAT-----CGCG-AATATATGTGTCAATCAGAAGGGAATACAT 7135 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| || || |||||||| || || || || |||||| | | ||| || | Sbjct 7136 CTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGAT 7195 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| || ||| ||| | | | ||||||||||| || || ||||| ||||| Sbjct 7196 TTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGC 7255 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 |||||| ||||| | || ||||| | | || | | || || ||||| Sbjct 7256 AAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATG 7315 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 || || |||||| || || || || || || || ||||| || ||| || | ||||| Sbjct 7316 GGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTT 7375 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAG 14463 ||| | | ||| ||||| | |||| || ||||||| || ||||| |||| Sbjct 7376 ATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAG 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724330080800