Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq602 214 2e-50
>seq602
Length=19998
Score = 214 bits (236), Expect = 2e-50
Identities = 588/893 (66%), Gaps = 20/893 (2%)
Strand=Plus/Plus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
||||||||||| | |||| | |||||||| ||||| |||| ||| || || ||
Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605
Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAA-CCTAGTTCTAATA 13698
||||| |||||||| || ||| | ||||| | ||| ||| | |||| || ||| | |
Sbjct 6606 TCCATGAAATCAAACGGGTTT-TCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCA 6663
Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758
| | |||||| |||| || ||||| || |||||| |||||||||| ||||
Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723
Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818
| | || || | || ||||| | ||| ||| || ||||| | ||||
Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783
Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878
| |||||| | | | || | ||| || || | | || ||| ||||
Sbjct 6784 TGGCATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCAA 6843
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
| || ||| || ||||| |||||||| || || ||||| ||||| || | || ||||
Sbjct 6844 ACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCA 6903
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
||| || || ||||||| |||||| || || ||||| ||||||||||||||||| ||||
Sbjct 6904 TCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCT 6963
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCC--AAACGATGCTTTTTTGTTCGATATCCA 14056
||||||| ||||| || | | || ||| | ||| | || | | || | |||||
Sbjct 6964 CAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021
Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116
|| |||||||| | |||||||| ||| | || ||| || || || || ||
Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081
Query 14117 ATAT------TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170
| | |||| ||| | | | ||| ||||| ||||| || | | ||||||
Sbjct 7082 TTTTAGACGCTCCTGCTCAT-----CGCG-AATATATGTGTCAATCAGAAGGGAATACAT 7135
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230
||||| || || |||||||| || || || || |||||| | | ||| || |
Sbjct 7136 CTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGAT 7195
Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290
||| || ||| ||| | | | ||||||||||| || || ||||| |||||
Sbjct 7196 TTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGC 7255
Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350
|||||| ||||| | || ||||| | | || | | || || |||||
Sbjct 7256 AAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATG 7315
Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410
|| || |||||| || || || || || || || ||||| || ||| || | |||||
Sbjct 7316 GGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTT 7375
Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAG 14463
||| | | ||| ||||| | |||| || ||||||| || ||||| ||||
Sbjct 7376 ATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAG 7428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479724330080800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |