Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq602 223 3e-53 >seq602 Length=19998 Score = 223 bits (246), Expect = 3e-53 Identities = 590/893 (66%), Gaps = 20/893 (2%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | |||| | |||||||||||||| |||| ||| || || || Sbjct 6546 TTTTGATATTCGCCAACTTTCTTTTCAAAAAAGTTGCTTTTTCCTGACATGGAAATTAAA 6605 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAA-CCTAGTTCTAATA 13486 ||||| ||||| || || ||| | ||||| | ||| ||| | |||| || ||| | | Sbjct 6606 TCCATGAAATCAAACGGGTTT-TCGACATTATACAGTTT-TGACAAACCAAGTGAGAGCA 6663 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | |||||| |||| || ||||| || |||||| |||||||||| |||| Sbjct 6664 GAAGTCTATCGGCAACGAAGCAGATATACTGCTTCATTAAGGTGGAATTCATACCAATTA 6723 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | | || || | || | ||||| | ||| ||| || ||||| | |||| Sbjct 6724 GGTCGACCGGCAGAGAATCAACCAAAAAAGACTGTTCAATACTAACGGCCTCATCGATAA 6783 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | | ||||| | | | || | ||| || || | | || ||| |||| Sbjct 6784 TGGCATATATAATCGCCGGATCTGCCGGCTTTTTCAGGTGGGAATGTAATAGACAAGCAA 6843 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 | || ||| || ||||| |||||||| || || ||||| ||||| || | || |||| Sbjct 6844 ACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAGCCCAGGCA 6903 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 ||| || || ||||||| |||||| || || || || || |||||||||||||| |||| Sbjct 6904 TCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAATATGCCCT 6963 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCC--AAACGATGCTTTTTTGTTTGATATCCA 13844 ||||||| ||||| || | |||| ||| | ||| | || | | |||| ||||| Sbjct 6964 CAACTGCGGCAAATGCAACCAGTC--TCTGCGAAAAGGGGGCATCTGGATTTGCAATCCA 7021 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA--- 13901 || |||||||| | |||||||| ||| | || |||||| || ||||| Sbjct 7022 GTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGTTGAACAA 7081 Query 13902 ---TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 || | | |||| ||| | | | ||| ||||| ||||| || | | |||||| Sbjct 7082 TTTTAGACGCTCCTGCTCAT-----CGCG-AATATATGTGTCAATCAGAAGGGAATACAT 7135 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| || || ||||| || || || || || ||||| | | ||| |||| Sbjct 7136 CTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCTGGGAT 7195 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 ||| |||||| ||| | | | || |||||||| ||||| ||||| ||||| Sbjct 7196 TTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAGGCTGC 7255 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 |||||| ||||| | || ||||| | | || | | || || ||||| Sbjct 7256 AAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTCCCCGTCATTCAGAGACGCCCAATG 7315 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 || || |||||| || || || || || || || ||||| || ||| || | ||||| Sbjct 7316 GGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGACTTTTT 7375 Query 14199 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAG 14251 ||| | | ||| ||||| | |||| || ||||||| || ||||| |||| Sbjct 7376 ATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCTGGAAG 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585138795680