Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq602 188 1e-42 seq113 156 6e-33 >seq602 Length=19998 Score = 188 bits (208), Expect = 1e-42 Identities = 402/594 (68%), Gaps = 15/594 (3%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| || |||||||| |||||||| || | ||||||||||| || || Sbjct 6836 ACAAGCAAACTCGGTATGTAGACCCTCGTCTCTACTGATCAGCTCGTTGGAAAAAGTAAG 6895 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || || |||||||| | |||||| || | ||||| || || |||||||| Sbjct 6896 CCCAGGCATCAGACCGCGCTTTTTTATCCAAAAGATGGCTGCAAACGACCCGGAAAAGAA 6955 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT- 42241 || || || ||||| ||||| |||| ||||||| | | |||| ||| || | Sbjct 6956 TATGCCCTCAACTGCGGCAAATGCAACCAGTCTCTGCGAAAAGGGGGCATCTG-GATTTG 7014 Query 42242 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| || |||||| | ||| || |||| | | ||| || ||| ||||| | Sbjct 7015 CAATCCAGTTCAAAGCCCATTTGGCTTTTTTTTCAATGCTAGGGATATATTCGATGGCGT 7074 Query 42300 TAAAGAGATAGtttttttCATTACT----ATCTTTAACATATGTATCGATCAAAAGACTA 42355 | | | | |||| | | || ||| || |||||| || |||| ||| | Sbjct 7075 TGA----ACAATTTTAGACGCTCCTGCTCATCGCGAATATATGTGTCAATCAGAAGGGAA 7130 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || ||||| || ||||| || || || || ||||| || | | ||||| Sbjct 7131 TACATCTCAGAATGGATATTTTCCATCATGATTTGGAACCCGTAAAAGAAACGAGCCTCT 7190 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | || || || || ||| || || |||||||||| || || ||||| || | Sbjct 7191 GGGATTTGCACCTCCCTAGCAAAGCGAACAACTAAATTTTCATTTACAATTCCATCGGAG 7250 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TT 42534 ||||||||||| ||||| || || ||||||| ||| ||| || | | Sbjct 7251 GCTGCAAAAAAGGCCAAAACGTGAGAGATAAAATGGCGTTC-CCCGTCATTCAGAGACGC 7309 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||||| | | ||| || || | || || ||||| |||||||| || || || | | Sbjct 7310 CCAATGGGTTAGATCCTTTGACAGGTCCACCTCTTCGACCGTCCAGAAGGAAGCAACCGA 7369 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||||||||| | | |||||| || | ||||| ||||| ||||| || ||||| Sbjct 7370 CTTTTTATAAAAAAGCCAGATTTCCTCATATTTGATTGGAAAAATCACGAATCT 7423 >seq113 Length=5777 Score = 156 bits (172), Expect = 6e-33 Identities = 1127/1808 (62%), Gaps = 29/1808 (2%) Strand=Plus/Plus Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883 |||||| || || ||||| |||||||| || ||||| || |||| ||||||||| Sbjct 3356 GGCTTT-GTTCGCAGATAATACATGCCGGTCTTTAGCCCCTTTTTCCACGAGTAAAAATG 3414 Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 |||| || || || || | ||| ||||| ||||||||||| | ||||| ||||| Sbjct 3415 CATAGAAGTGAGCTTCGAGATGGAAGGCTCGGCAATGTGAATATTGAGAGACTGGCTTTG 3474 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 ||||| ||||| || | ||| | ||||| | ||||| ||||||||||||||||||| Sbjct 3475 GTCGATAAAGGCGCCTCGGTCCACGGCCATATCAATGATGCTCTTTTGTGGAATTTCCCA 3534 Query 71004 AATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGGATCC 71060 | || |||||| || | || ||||| |||| | | ||||| ||| || || Sbjct 3535 CACGGTCCTATAAAGGTGCCTTATGTCTTCAGGAATCTCGGGTATATTCGCAATTGAGCC 3594 Query 71061 ACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAAC 71120 | | |||||| ||||| || || ||| ||| || | | | ||| | Sbjct 3595 ATTGTTTGCAATGATCCTGGTTCGCATAGACGCATCCCACAAACCTAGATTTATCAAATC 3654 Query 71121 TCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAAT 71180 ||| ||||| |||| | | ||||||||| || || || |||| | || || || Sbjct 3655 CTTAAAGAGATATTGATTGAGAATTTGAAATTCGCCGGATAACACTCGTCTTGTATATAT 3714 Query 71181 ATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 71240 ||| || || | || | | || || || || ||||| | || || || || Sbjct 3715 ATTTGACGTGTAGGCCTCAAAGCATTCGTTGAACCCTAATATTTGGGATGTCGAGGCCGT 3774 Query 71241 CGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTT 71298 ||||| || || | | | || |||| ||| | | || | || | Sbjct 3775 GGGCATCGGAGCTAGGAGCAAGGAGTTCCTAACGCCA--TACTTGGCAACCTTCGCACGA 3832 Query 71299 AGAGATTCCCAATTCC--AAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA 71356 || || ||||||| || |||||| ||||| ||||| | Sbjct 3833 AGGGAATCCCAATCCCATAAAGAT--GATGGCACAACATTCCACATGTCGAATTGAAAGA 3890 Query 71357 TGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416 |||| | | | | ||| || | ||||||| || || | || || | Sbjct 3891 TGCCCTGAGAAATGGGGCTTCCCTGGTAAGACTCGTATGTACCAGTTTGCTGAGCCAGCT 3950 Query 71417 CACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 71476 |||| | ||| | || ||| || || || || || ||||| | || | ||| Sbjct 3951 CACACGACTGCTCAAGAGCAGCATGGTATATTGTCTCAAATATCTTTATGTTCAATTCTC 4010 Query 71477 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536 | ||| ||||| ||||| || || | | | |||| ||||| | ||||| | Sbjct 4011 GCGCTGGAGGGCTGTCAAAAGGCATTTTGCATCGTAAGAACGTATCTGCAAGACCTTGGA 4070 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596 ||||||| || || ||||| |||||| |||| || ||| || | |||||| Sbjct 4071 CGCCAATTCCAATCGGTCTATGTCTCATATTTGATCGCCTAGCCTCCTCGACAGGATAGA 4130 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTT 71656 | || | ||| ||||| ||||| |||||| | || |||||| | |||| | ||| Sbjct 4131 AGTTGACATCGATAATATTATTAAGATTTTTTGTTACCACTTTGGCAACATAATGTAGCA 4190 Query 71657 TGAGAAAATCAAATCTCCCATC---TATTACAAACA-CGTTCAAG-GCAACAGATGCCAG 71711 | ||||||||| ||| || | | | ||||| || ||| |||| || || || Sbjct 4191 TATCAAAATCAAAAGACCCGTCGCTTTTGATAAACATCG--GAAGTGCAATGGAAGCGAG 4248 Query 71712 ATTACAAACGGCTACCTCA--TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTA 71769 |||||||||| |||||| || || | || || || ||||| || || | || Sbjct 4249 GTTACAAACGGAAACCTCATCTTTTGAT--GAGTACTGGATGATTTCTGTACACAAGTTT 4306 Query 71770 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 71829 | |||||||| || | |||| ||||||| |||| ||| || | ||| ||| | Sbjct 4307 GAGCTTTTGATGGTCCCCAGGTTTTTTTGATTAGACTTTGCGTTGCAAGAATCTTTAAAG 4366 Query 71830 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 71889 || || | || || || ||||| | || | || | ||| || | ||||| | | Sbjct 4367 AGCATGTATGGCGTTCCGGTTTCCACTTGCGCATCAAGAATGGCATACCAGAGCTTTTGG 4426 Query 71890 GCCTTTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 71948 || || | || | | | ||| | || ||| | |||||| ||| || Sbjct 4427 GCAGGGATCGTTTTACGACCAAGACCTTTGGC-CTCATATGAAGCATATAACTCTTCAAA 4485 Query 71949 CTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC 72008 ||| ||||||| | | || || ||| ||||| ||||| | | | |||| Sbjct 4486 CTCCGGTCCCCAACAGTCGGACAAACCTGGAGCGTCATTTGGACAGAAAAGAGTCCACAT 4545 Query 72009 TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 ||||| | | ||||||||||| || ||||| || ||||| || || ||| ||||| Sbjct 4546 CCCATCTTGCTCCACTCGTTTCATGAACAGATCGGGTATCCATAGGGCATAAAAAAGATC 4605 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 ||| | | ||| || ||||| ||| || || | ||| | ||| | | || ||| Sbjct 4606 CCTGCACCGACCCTCGTCTTTTCCAAAATTTTTCTTTAAATCCAAGAAATCGAAAACATC 4665 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 || ||||| || ||||| || || || | | || || ||||| || || || ||||| Sbjct 4666 AGCGTGCCAGGGCTCCAAATAAATTGCAAAGGCGCCAGGTCGTTTATTCCCGCCTTGATC 4725 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | |||| || || | ||||| || | | ||| || | ||||| || || || Sbjct 4726 GACATATCGTGCAGTCATGTTATAGACACGAAGCATGGGGACTATACCGTTTGAGTAGCC 4785 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT-TGATAGACCTATTC 72307 | || || | ||||| ||| ||| | ||||| || ||| ||||| | | Sbjct 4786 ACCTGTTCCAGCAATATAAGACCCAGAGGCTCTTATATTATGGATATGA-AGACCAACAC 4844 Query 72308 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 72367 |||| || || || ||||| ||| ||| | || ||||| || || || Sbjct 4845 CCCCGGCAGACTTGCTAATCAATGCACATGTTTTCAGGGTGTCATATATTCCGGTGATCG 4904 Query 72368 TATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 72427 ||| || |||| || | ||||||| || | ||| | || || || |||| Sbjct 4905 AATCGTCAGTCATTGCAATCAAAAAACAGGATGAAAGCTGGGGCCGCGGTGTACCGGCAT 4964 Query 72428 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 72487 |||| | ||| || || || || || ||| | ||||| | ||| ||||| || | Sbjct 4965 TAAAAAGGGTTGGGGAGGCATGGGTGAACATCCGCTGAGACATCAAATTATACGTTTCGA 5024 Query 72488 TAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 | || || || | || || | || || || | ||| || | ||| | || || ||| Sbjct 5025 TGGCAGAGTCGACGTCTTCACCG-TGAATGCCAAGCGCAACTCTCATGATCAGATACTGG 5083 Query 72547 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 72606 || | || || | |||| | ||| ||| || || || || | |||||||| Sbjct 5084 GGACGCTCCACAACCTTGCCCCTGATTCTCAGCAGATACGAACGCTCAAGGGTTTTAAAT 5143 Query 72607 CCAAAATA 72614 |||||||| Sbjct 5144 CCAAAATA 5151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134065785120