Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09-
30] 612 sequences; 5,636,959 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq602 196 7e-45
>seq602
Length=19998
Score = 196 bits (216), Expect = 7e-45
Identities = 395/571 (69%), Gaps = 19/571 (3%)
Strand=Plus/Minus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| |||| ||| | || || ||| | || |||||| | || ||||| |||
Sbjct 7411 TTTCCAATCAAATATGAGGAAATCTGGCTTTTTTATAAAAAGTCGGTTGCTTCCTTCTGG 7352
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|||||||||||||| || ||||| ||||| || | |||||| | ||| ||| |||
Sbjct 7351 ACGGTCGAAGAGGTGGACCTGTCAAAGGATCTAACCCATTGGGCGTCTC---TGAATGAC 7295
Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177
|| || | ||||| || ||| |||||||||| ||||| | |||||||||||| ||
Sbjct 7294 GGGGAACGCCATTTTATCTCTCACGTTTTGGCCTTTTTTGCAGCCTCCGATGGAATTGTA 7235
Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG-CT 125235
|| || ||| | |||| || || || ||| || || ||||||| |||| ||
Sbjct 7234 AATGAAAATTTAGTTGTT-CGCTTTGCTAGGGAGGTGCAAATCCCAGAGGC-TCGTTTCT 7177
Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295
||||||| |||||||||||||| || || | || || || ||||| || |||||||
Sbjct 7176 TTTACGGGTTCCAAATCATGATGGAAAATATCCATTCTGAGATGTATTCCCTTCTGATTG 7117
Query 125296 ACATGTACATTCGCGAT---CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352
||| || ||||||||| | | | ||| | | || | || ||||| |||||
Sbjct 7116 ACACATATATTCGCGATGAGCAGGAGCGTCTA-AAAT--TGTTCAACGCCATCGAATATA 7060
Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG-ATGACGACAAGTCT 125411
| || || ||||| || |||||| | ||||| | | | | | | |
Sbjct 7059 TCCCTAGCATTGAAAAAAAAGCCAAATGGGCTTTGAACTGGATTGCAAATCCAGATGCCC 7000
Query 125412 TC-GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTA 125469
| | ||| | |||||||| ||||| ||||| || |||||||| ||||||| |||||
Sbjct 6999 CCTTTTCGC--AGAGACTGGTTGCATTTGCCGCAGTTGAGGGCATATTCTTTTCCGGGTC 6942
Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529
| ||||| |||||||||||| | || |||||||| || ||||| || || || |
Sbjct 6941 G-TTTGCAGCCATCTTTTGGATAAAAAAGCGCGGTCTGATGCCTGGGCTTACTTTTTCCA 6883
Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACA 125560
||||| | || | |||||||||| |||||
Sbjct 6882 ACGAGCTGATCAGTAGAGACGAGGGTCTACA 6852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741053530897120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |