Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mitosporidium_20daphniae_20[genbank_20GCA_5F000760515.1_202014-09- 30] 612 sequences; 5,636,959 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq49 107 1e-18 seq612 84.2 2e-11 >seq49 Length=10291 Score = 107 bits (118), Expect = 1e-18 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| || ||| | |||| ||| ||||| || |||||||| || || || || Sbjct 9951 CCTCCTCGCAGTCTCAGCACTAGATGGAGGGTTGACTCTTTTTGAATATTATAGTCAGAG 10010 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | || || ||||| |||| | ||||| ||||| || Sbjct 10011 AGCGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGGCGTTGCTGGTCAGGCGGT 10070 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||| ||||||| |||| ||||| || | ||| || Sbjct 10071 ATTCCTTCTTTGTCTTGGATTTTTTGCTTTACATTTTCAATGGTGTCTGAAGATTCAACT 10130 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT---TGAAAAT 15373 |||| || || ||||| || || || ||||| || || |||||||| | |||||| Sbjct 10131 TCTAGCGTGATTGTTTTCCCAGTAAGTGTTTTGACGAAGATTTGCATGGTGAGTGAAAAG 10190 Query 15374 AAAAT 15378 ||||| Sbjct 10191 AAAAT 10195 >seq612 Length=74583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || || || ||||| || |||| | || || | || Sbjct 29751 ATGGAGCGTGGACTCCTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCCTCAAGCTG 29692 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | |||| || || ||||| ||||||||||| ||||| ||||| Sbjct 29691 TTTGCCTGCAAAAATCAGGCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 29632 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||| || | || || || | |||||||| || || || Sbjct 29631 CTGCTTCACATTCTCAATGGTGTCCGAAGACTCCACTTCGAGCGTAATGGTCTTGCCCGT 29572 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||||||||| Sbjct 29571 AAGTGTTTTGACAAAAATTTGCAT 29548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176498595892